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2YMW

Structure of the epsilon-lysine oxidase from Marinomonas mediterranea

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0016491molecular_functionoxidoreductase activity
A0031640biological_processkilling of cells of another organism
A0033736molecular_functionL-lysine 6-oxidase activity
A0042742biological_processdefense response to bacterium
A0048038molecular_functionquinone binding
A1900191biological_processnegative regulation of single-species biofilm formation
B0005576cellular_componentextracellular region
B0016491molecular_functionoxidoreductase activity
B0031640biological_processkilling of cells of another organism
B0033736molecular_functionL-lysine 6-oxidase activity
B0042742biological_processdefense response to bacterium
B0048038molecular_functionquinone binding
B1900191biological_processnegative regulation of single-species biofilm formation
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 1687
ChainResidue
AASP250
AALA252
AILE255
APRO583

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NA A 1688
ChainResidue
ATHR517
ATRQ581
APRO582
ASER585

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH A 1689
ChainResidue
ATYR576
ATYR577
AEOH1691
AHOH2211
AHOH2266
AMET379

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1690
ChainResidue
ALYS352

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 1691
ChainResidue
AASN314
ATYR577
ATYR579
AEOH1689

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1692
ChainResidue
AASP358

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1693
ChainResidue
AASP111
AHOH2400

site_idAC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1694
ChainResidue
AMET340
AASN344

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH A 1695
ChainResidue
AHIS601
AHIS603
AHIS652
APHE655
ALYS685

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH A 1696
ChainResidue
ALYS93
AILE451
AMET505
ATRP509
AASP512

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1697
ChainResidue
ASER323

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1698
ChainResidue
AASN21
ALYS50
AARG57

site_idBC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1699
ChainResidue
AALA333
AALA334

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 1700
ChainResidue
AGLN362
AVAL363
ALEU364
APHE523

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1701
ChainResidue
AASN70
AHOH2402

site_idBC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1702
ChainResidue
ATRP587
AASN611

site_idBC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1703
ChainResidue
AEOH1716

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 1704
ChainResidue
AASN21
APHE22
AHIS36
AARG57

site_idCC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1705
ChainResidue
AHOH2078
AHOH2301

site_idCC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1706
ChainResidue
ASER134

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1707
ChainResidue
AASN205
AASP216

site_idCC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1708
ChainResidue
AASP327

site_idCC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1709
ChainResidue
AGLU368
ASER524
AHOH2254

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1710
ChainResidue
ATYR472
ATYR477
ATHR484

site_idCC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 1711
ChainResidue
APHE346
AARG347
AGLN348
APRO360

site_idCC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH A 1712
ChainResidue
ASER602
AARG614
AARG650
AHIS652
APHE679
AHOH2355

site_idCC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1713
ChainResidue
AALA550

site_idDC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1714
ChainResidue
AGLN637
AASN638
AASP640

site_idDC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1715
ChainResidue
AGLY30

site_idDC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1716
ChainResidue
ATHR395
AEOH1703

site_idDC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1717
ChainResidue
AGLY641

site_idDC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1718
ChainResidue
APRO42
ATHR43

site_idDC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1719
ChainResidue
ALYS530
ALYS569

site_idDC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH A 1720
ChainResidue
AVAL11
AASN25
APRO26
AGLN61
AALA437
ASER438

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH A 1722
ChainResidue
AILE158
APRO159
AGLU160
ATYR162

site_idDC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1723
ChainResidue
AASP358
AASN351
AASP356

site_idEC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH A 1724
ChainResidue
AASP281
ATHR284

site_idEC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1725
ChainResidue
ACYS507

site_idEC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH A 1726
ChainResidue
AGLN133
ALEU163
AHIS164

site_idEC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1727
ChainResidue
ASER125

site_idEC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH A 1803
ChainResidue
AHOH2217

site_idEC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 1687
ChainResidue
BASP250
BALA252
BILE255
BPRO583
BGLN584

site_idEC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE NA B 1688
ChainResidue
BCYS516
BTHR517
BTRQ581
BPRO582
BSER585

site_idEC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1689
ChainResidue
BGLY175
BGOL1714
BHOH2135

site_idEC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1690
ChainResidue
BGLY54
BGLU649
BASN651

site_idFC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1691
ChainResidue
BGLU593
BGLU649
BARG650

site_idFC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1692
ChainResidue
BGLN348
BPRO360
BHOH2235

site_idFC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH B 1693
ChainResidue
BASP656
BPHE657

site_idFC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH B 1694
ChainResidue
BSER675
BEOH1702

site_idFC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1695
ChainResidue
AHIS601
BSER559
BVAL560

site_idFC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1696
ChainResidue
BARG329
BGLY331
BPHE421

site_idFC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH B 1697
ChainResidue
BLEU32
BGLN637

site_idFC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH B 1698
ChainResidue
BPHE523
BHOH2248

site_idFC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1699
ChainResidue
BASP428
BASP433
BHOH2271

site_idGC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EOH B 1700
ChainResidue
BGLU28
BILE29
BASP433
BTHR436

site_idGC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH B 1702
ChainResidue
BEOH1694
BHOH2337

site_idGC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH B 1703
ChainResidue
BASN314
BMET379
BTYR576
BTYR577
BSER578
BTYR579

site_idGC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EOH B 1704
ChainResidue
BLYS93
BILE221
BVAL246
BGLY247
BILE451
BGLU452

site_idGC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EOH B 1705
ChainResidue
BASN105
BTYR108
BLYS352
BGLU400
BGLN458

site_idGC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH B 1706
ChainResidue
BTYR343

site_idGC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH B 1707
ChainResidue
BALA333

site_idGC8
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH B 1708
ChainResidue
BASN157

site_idGC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EOH B 1709
ChainResidue
BSER176
BGLY200
BALA202
BGLN510
BVAL623
BGLU624
BTRP626

site_idHC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH B 1710
ChainResidue
BGLY355

site_idHC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE EOH B 1711
ChainResidue
BSER558

site_idHC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH B 1712
ChainResidue
BGLN325
BPHE326

site_idHC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EOH B 1713
ChainResidue
BTYR211
BCYS448
BASN515

site_idHC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 1714
ChainResidue
BGLY175
BEOH1689
BGOL1715

site_idHC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL B 1715
ChainResidue
BGLN174
BSER620
BGLU624
BGOL1714

site_idHC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE EOH B 1802
ChainResidue
BGLY285
BHOH2188

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Tryptophylquinone
ChainResidueDetails
ATRQ581
BTRQ581

site_idSWS_FT_FI2
Number of Residues4
DetailsCROSSLNK: 4'-cysteinyl-tryptophylquinone (Cys-Trp)
ChainResidueDetails
ACYS516
ATRQ581
BCYS516
BTRQ581

224201

PDB entries from 2024-08-28

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