Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2YJ0

X-ray structure of chemically engineered Mycobacterium tuberculosis Dodecin

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0005576	cellular_component	extracellular region
B	0000166	molecular_function	nucleotide binding
B	0005576	cellular_component	extracellular region
C	0000166	molecular_function	nucleotide binding
C	0005576	cellular_component	extracellular region
D	0000166	molecular_function	nucleotide binding
D	0005576	cellular_component	extracellular region
E	0000166	molecular_function	nucleotide binding
E	0005576	cellular_component	extracellular region
F	0000166	molecular_function	nucleotide binding
F	0005576	cellular_component	extracellular region

Functional Information from PDB Data

site_id	AC1
Number of Residues	12
Details	BINDING SITE FOR RESIDUE 420 A 100

Chain	Residue
A	GLU9
D	LYS61
D	FMN300
D	FMN300
A	VAL11
A	GLN42
A	SER43
A	ARG45
A	ARG45
A	CYS59
D	TRP38
D	GLU40

site_id	AC2
Number of Residues	17
Details	BINDING SITE FOR RESIDUE COA A 200

Chain	Residue
A	ARG28
A	THR32
A	MET33
A	ARG34
A	PHE64
A	ARG65
A	GLU67
A	HOH2030
D	ARG6
D	ILE8
D	MET33
D	PHE64
D	LEU66
D	COA200
F	ARG6
F	LEU66
F	COA200

site_id	AC3
Number of Residues	14
Details	BINDING SITE FOR RESIDUE FMN A 300

Chain	Residue
A	TYR5
A	ASP37
A	TRP38
A	ARG65
B	HIS3
B	ARG45
B	HIS47
B	GLN57
B	ARG65
B	420100
C	FMN300
F	VAL11
F	GLN57
F	420100

site_id	AC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE 420 B 100

Chain	Residue
A	GLU40
A	FMN300
B	GLU9
B	VAL11
B	GLN42
B	SER43
B	ARG45
B	GLN57
B	CYS59
B	HOH2023
C	GLU40
C	FMN300
F	ARG45
F	420100
C	TRP38

site_id	AC5
Number of Residues	16
Details	BINDING SITE FOR RESIDUE COA B 200

Chain	Residue
B	ARG28
B	THR32
B	ARG34
B	PHE64
B	ARG65
B	GLU67
B	CL1071
B	HOH2024
C	ARG6
C	ALA29
C	MET33
C	LEU66
C	COA200
E	ARG6
E	COA200
B	MET33

site_id	AC6
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN B 300

Chain	Residue
B	TYR5
B	ASP37
B	TRP38
B	ARG65
B	HOH2016
D	ARG45
D	HIS47
D	GLN57
E	GLN57
E	420100
F	FMN300

site_id	AC7
Number of Residues	12
Details	BINDING SITE FOR RESIDUE 420 C 100

Chain	Residue
C	GLU9
C	VAL11
C	GLN42
C	SER43
C	ARG45
C	ARG45
C	CYS59
C	HOH2024
E	TRP38
E	LYS61
E	FMN300
E	FMN300

site_id	AC8
Number of Residues	17
Details	BINDING SITE FOR RESIDUE COA C 200

Chain	Residue
B	COA200
B	CL1071
C	ARG28
C	THR32
C	ARG34
C	PHE64
C	ARG65
C	GLU67
C	HOH2026
E	ARG6
E	ILE8
E	MET33
E	PHE64
E	LEU66
E	COA200
B	ARG6
B	LEU66

site_id	AC9
Number of Residues	13
Details	BINDING SITE FOR RESIDUE FMN C 300

Chain	Residue
A	FMN300
B	VAL11
B	GLN57
B	420100
C	TYR5
C	ASP37
C	TRP38
C	ARG65
C	HOH2027
F	ARG45
F	HIS47
F	GLN57
F	420100

site_id	BC1
Number of Residues	12
Details	BINDING SITE FOR RESIDUE 420 D 100

Chain	Residue
D	GLU9
D	VAL11
D	GLN42
D	SER43
D	ARG45
D	GLN57
D	CYS59
E	ARG45
E	420100
F	TRP38
F	LYS61
F	FMN300

site_id	BC2
Number of Residues	17
Details	BINDING SITE FOR RESIDUE COA D 200

Chain	Residue
A	ARG6
A	COA200
C	ASP16
D	ARG28
D	THR32
D	MET33
D	ARG34
D	PHE64
D	ARG65
D	GLU67
D	HOH2026
D	HOH2031
F	ARG6
F	MET33
F	PHE64
F	LEU66
F	COA200

site_id	BC3
Number of Residues	10
Details	BINDING SITE FOR RESIDUE FMN D 300

Chain	Residue
A	ARG45
A	HIS47
A	GLN57
A	GLN57
A	420100
A	420100
D	TYR5
D	ASP37
D	TRP38
D	ARG65

site_id	BC4
Number of Residues	15
Details	BINDING SITE FOR RESIDUE 420 E 100

Chain	Residue
B	TRP38
B	GLU40
B	GLN42
B	LYS61
B	FMN300
D	ARG45
D	420100
E	GLU9
E	VAL11
E	GLN42
E	SER43
E	ARG45
E	GLN57
E	CYS59
F	FMN300

site_id	BC5
Number of Residues	15
Details	BINDING SITE FOR RESIDUE COA E 200

Chain	Residue
B	ARG6
B	MET33
B	LEU66
B	COA200
B	CL1071
C	ARG6
C	COA200
E	ARG28
E	THR32
E	MET33
E	ARG34
E	PHE64
E	ARG65
E	GLU67
E	HOH2022

site_id	BC6
Number of Residues	11
Details	BINDING SITE FOR RESIDUE FMN E 300

Chain	Residue
C	ARG45
C	ARG45
C	GLY46
C	HIS47
C	GLN57
C	GLN57
C	420100
C	420100
E	TYR5
E	ASP37
E	TRP38

site_id	BC7
Number of Residues	15
Details	BINDING SITE FOR RESIDUE 420 F 100

Chain	Residue
A	VAL7
A	TRP38
A	LYS61
A	FMN300
B	ARG45
B	HIS47
B	420100
C	FMN300
F	GLU9
F	VAL11
F	GLN42
F	SER43
F	ARG45
F	GLN57
F	CYS59

site_id	BC8
Number of Residues	20
Details	BINDING SITE FOR RESIDUE COA F 200

Chain	Residue
A	ARG6
A	ILE8
A	MET33
A	PHE64
A	LEU66
A	COA200
D	ARG6
D	LEU66
D	COA200
D	HOH2028
F	ARG28
F	THR32
F	MET33
F	ARG34
F	PHE64
F	ARG65
F	GLU67
F	HOH2022
F	HOH2024
F	HOH2025

site_id	BC9
Number of Residues	14
Details	BINDING SITE FOR RESIDUE FMN F 300

Chain	Residue
B	FMN300
D	ARG45
D	GLN57
D	420100
E	ARG45
E	HIS47
E	GLN57
E	420100
F	HIS3
F	TYR5
F	ASP37
F	ASP50
F	ARG65
F	TRP38

site_id	CC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL A 1070

Chain	Residue
A	LYS61
F	LYS61

site_id	CC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 1070

Chain	Residue
B	LYS61
C	LYS61
E	LYS61

site_id	CC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL B 1071

Chain	Residue
B	COA200
C	COA200
E	COA200

site_id	CC4
Number of Residues	14
Details	BINDING SITE FOR RESIDUE SO4 D 1070

Chain	Residue
A	ARG6
A	VAL7
A	ILE8
A	GLU9
A	HOH2006
D	ARG6
D	VAL7
D	ILE8
D	GLU9
D	HOH2005
F	ARG6
F	VAL7
F	ILE8
F	GLU9

site_id	CC5
Number of Residues	14
Details	BINDING SITE FOR RESIDUE SO4 E 1070

Chain	Residue
B	ARG6
B	VAL7
B	ILE8
B	GLU9
B	HOH2003
C	ARG6
C	VAL7
C	ILE8
C	GLU9
C	HOH2002
E	ARG6
E	VAL7
E	ILE8
E	GLU9

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)