2YG9
Structure of an unusual 3-Methyladenine DNA Glycosylase II (Alka) from Deinococcus radiodurans
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006281 | biological_process | DNA repair |
A | 0006284 | biological_process | base-excision repair |
A | 0006285 | biological_process | base-excision repair, AP site formation |
A | 0006307 | biological_process | DNA alkylation repair |
A | 0006950 | biological_process | response to stress |
A | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
A | 0032131 | molecular_function | alkylated DNA binding |
A | 0032993 | cellular_component | protein-DNA complex |
A | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
B | 0003824 | molecular_function | catalytic activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006281 | biological_process | DNA repair |
B | 0006284 | biological_process | base-excision repair |
B | 0006285 | biological_process | base-excision repair, AP site formation |
B | 0006307 | biological_process | DNA alkylation repair |
B | 0006950 | biological_process | response to stress |
B | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
B | 0032131 | molecular_function | alkylated DNA binding |
B | 0032993 | cellular_component | protein-DNA complex |
B | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL B 1226 |
Chain | Residue |
A | GOL1228 |
B | GLY110 |
B | SER112 |
B | LYS115 |
site_id | AC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL B 1227 |
Chain | Residue |
B | GLY155 |
B | THR158 |
site_id | AC3 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CL A 1226 |
Chain | Residue |
A | HOH2078 |
A | HOH2199 |
A | GLY110 |
A | SER112 |
A | LYS115 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL A 1227 |
Chain | Residue |
A | GLY155 |
A | THR158 |
site_id | AC5 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE GOL A 1228 |
Chain | Residue |
A | PRO40 |
A | VAL41 |
A | HOH2062 |
A | HOH2074 |
A | HOH2322 |
A | HOH2323 |
B | ARG107 |
B | SER112 |
B | TRP113 |
B | CL1226 |
B | HOH2176 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NI B 1228 |
Chain | Residue |
A | NI1229 |
A | HOH2324 |
A | HOH2325 |
B | HIS35 |
B | HOH2048 |
B | HOH2260 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE NI A 1229 |
Chain | Residue |
A | HIS35 |
A | HOH2049 |
A | HOH2050 |
A | HOH2290 |
A | HOH2324 |
A | HOH2325 |
B | NI1228 |