2YG9
Structure of an unusual 3-Methyladenine DNA Glycosylase II (Alka) from Deinococcus radiodurans
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006281 | biological_process | DNA repair |
| A | 0006284 | biological_process | base-excision repair |
| A | 0006285 | biological_process | base-excision repair, AP site formation |
| A | 0006307 | biological_process | DNA alkylation repair |
| A | 0006974 | biological_process | DNA damage response |
| A | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
| A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| A | 0032131 | molecular_function | alkylated DNA binding |
| A | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006281 | biological_process | DNA repair |
| B | 0006284 | biological_process | base-excision repair |
| B | 0006285 | biological_process | base-excision repair, AP site formation |
| B | 0006307 | biological_process | DNA alkylation repair |
| B | 0006974 | biological_process | DNA damage response |
| B | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
| B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
| B | 0032131 | molecular_function | alkylated DNA binding |
| B | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL B 1226 |
| Chain | Residue |
| A | GOL1228 |
| B | GLY110 |
| B | SER112 |
| B | LYS115 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 1227 |
| Chain | Residue |
| B | GLY155 |
| B | THR158 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 1226 |
| Chain | Residue |
| A | HOH2078 |
| A | HOH2199 |
| A | GLY110 |
| A | SER112 |
| A | LYS115 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL A 1227 |
| Chain | Residue |
| A | GLY155 |
| A | THR158 |
| site_id | AC5 |
| Number of Residues | 11 |
| Details | BINDING SITE FOR RESIDUE GOL A 1228 |
| Chain | Residue |
| A | PRO40 |
| A | VAL41 |
| A | HOH2062 |
| A | HOH2074 |
| A | HOH2322 |
| A | HOH2323 |
| B | ARG107 |
| B | SER112 |
| B | TRP113 |
| B | CL1226 |
| B | HOH2176 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE NI B 1228 |
| Chain | Residue |
| A | NI1229 |
| A | HOH2324 |
| A | HOH2325 |
| B | HIS35 |
| B | HOH2048 |
| B | HOH2260 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE NI A 1229 |
| Chain | Residue |
| A | HIS35 |
| A | HOH2049 |
| A | HOH2050 |
| A | HOH2290 |
| A | HOH2324 |
| A | HOH2325 |
| B | NI1228 |
