2YG8
Structure of an unusual 3-Methyladenine DNA Glycosylase II (Alka) from Deinococcus radiodurans
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0003905 | molecular_function | alkylbase DNA N-glycosylase activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006281 | biological_process | DNA repair |
| A | 0006284 | biological_process | base-excision repair |
| A | 0006285 | biological_process | base-excision repair, AP site formation |
| A | 0006307 | biological_process | DNA alkylation repair |
| A | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
| A | 0032131 | molecular_function | alkylated DNA binding |
| A | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0003905 | molecular_function | alkylbase DNA N-glycosylase activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006281 | biological_process | DNA repair |
| B | 0006284 | biological_process | base-excision repair |
| B | 0006285 | biological_process | base-excision repair, AP site formation |
| B | 0006307 | biological_process | DNA alkylation repair |
| B | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
| B | 0032131 | molecular_function | alkylated DNA binding |
| B | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL B 1226 |
| Chain | Residue |
| B | GLY110 |
| B | SER112 |
| B | LYS115 |
| B | HOH2172 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL B 1227 |
| Chain | Residue |
| B | GLY155 |
| B | THR158 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE CL A 1226 |
| Chain | Residue |
| A | HOH2081 |
| A | HOH2201 |
| A | GLY110 |
| A | SER112 |
| A | LYS115 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL A 1227 |
| Chain | Residue |
| A | GLY155 |
| A | THR158 |
| site_id | AC5 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE GOL A 1228 |
| Chain | Residue |
| A | PRO40 |
| A | VAL41 |
| A | HOH2065 |
| A | HOH2077 |
| A | HOH2282 |
| A | HOH2327 |
| A | HOH2328 |
| B | ARG107 |
| B | SER112 |
| B | TRP113 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE MES B 1228 |
| Chain | Residue |
| B | ALA126 |
| B | ILE131 |
| B | ASP132 |
| B | PHE133 |
| B | ALA134 |
| B | SER137 |
| B | GLY138 |
| B | HOH2186 |
| B | HOH2284 |
| B | HOH2285 |
