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2YG8

Structure of an unusual 3-Methyladenine DNA Glycosylase II (Alka) from Deinococcus radiodurans

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006284biological_processbase-excision repair
A0006285biological_processbase-excision repair, AP site formation
A0006307biological_processDNA alkylation repair
A0006950biological_processresponse to stress
A0008725molecular_functionDNA-3-methyladenine glycosylase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0032131molecular_functionalkylated DNA binding
A0032993cellular_componentprotein-DNA complex
A0043916molecular_functionDNA-7-methylguanine glycosylase activity
B0003824molecular_functioncatalytic activity
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0006284biological_processbase-excision repair
B0006285biological_processbase-excision repair, AP site formation
B0006307biological_processDNA alkylation repair
B0006950biological_processresponse to stress
B0008725molecular_functionDNA-3-methyladenine glycosylase activity
B0016798molecular_functionhydrolase activity, acting on glycosyl bonds
B0032131molecular_functionalkylated DNA binding
B0032993cellular_componentprotein-DNA complex
B0043916molecular_functionDNA-7-methylguanine glycosylase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 1226
ChainResidue
BGLY110
BSER112
BLYS115
BHOH2172

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 1227
ChainResidue
BGLY155
BTHR158

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 1226
ChainResidue
AHOH2081
AHOH2201
AGLY110
ASER112
ALYS115

site_idAC4
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1227
ChainResidue
AGLY155
ATHR158

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A 1228
ChainResidue
APRO40
AVAL41
AHOH2065
AHOH2077
AHOH2282
AHOH2327
AHOH2328
BARG107
BSER112
BTRP113

site_idAC6
Number of Residues10
DetailsBINDING SITE FOR RESIDUE MES B 1228
ChainResidue
BALA126
BILE131
BASP132
BPHE133
BALA134
BSER137
BGLY138
BHOH2186
BHOH2284
BHOH2285

224201

PDB entries from 2024-08-28

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