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2YCT

Tyrosine phenol-lyase from Citrobacter freundii in complex with pyridine N-oxide and the quinonoid intermediate formed with L-alanine

Functional Information from GO Data
ChainGOidnamespacecontents
A0006520biological_processamino acid metabolic process
A0006570biological_processtyrosine metabolic process
A0009072biological_processaromatic amino acid metabolic process
A0016829molecular_functionlyase activity
A0016830molecular_functioncarbon-carbon lyase activity
A0050371molecular_functiontyrosine phenol-lyase activity
B0006520biological_processamino acid metabolic process
B0006570biological_processtyrosine metabolic process
B0009072biological_processaromatic amino acid metabolic process
B0016829molecular_functionlyase activity
B0016830molecular_functioncarbon-carbon lyase activity
B0050371molecular_functiontyrosine phenol-lyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PLP A 1257
ChainResidue
AGLN98
ASER254
ALYS257
APO41461
AHOH2241
AHOH2372
AGLY99
AARG100
AGLU103
APHE123
ATHR125
AASN185
AASP214
AARG217

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE PLP B 1257
ChainResidue
BGLN98
BGLY99
BARG100
BGLU103
BPHE123
BASN185
BASP214
BARG217
BSER254
BLYS257
BHOH2256
BHOH2257

site_idAC3
Number of Residues19
DetailsBINDING SITE FOR RESIDUE PLI A 1457
ChainResidue
ATHR49
ASER51
AGLN98
AGLY99
AARG100
AGLU103
APHE123
ATHR125
AASN185
AASP214
ATHR216
AARG217
ASER254
ALYS257
AMET379
AARG404
A9PO1459
AHOH2241
AHOH2372

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE K A 1458
ChainResidue
AGLY52
AASN262
AHOH2069
BGLU69
BHOH2282

site_idAC5
Number of Residues10
DetailsBINDING SITE FOR RESIDUE 9PO A 1459
ChainResidue
AARG100
APHE123
ATHR124
AARG381
APHE448
APHE449
APLI1457
APO41461
AHOH2241
BTYR71

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE 9PO A 1460
ChainResidue
ASER12
ATRP61
AMET65
AHOH2373
BSER12
BTRP61
BMET65

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 1461
ChainResidue
ATHR49
APHE123
AASN185
AARG217
ALYS257
AARG381
AARG404
APLP1257
A9PO1459

site_idAC8
Number of Residues6
DetailsBINDING SITE FOR RESIDUE K B 1457
ChainResidue
AGLU69
AHOH2088
AHOH2259
BGLY52
BASN262
BHOH2255

site_idAC9
Number of Residues12
DetailsBINDING SITE FOR RESIDUE P33 B 1458
ChainResidue
ATYR3
ATYR324
ATYR414
AASP418
BTYR3
BTYR324
BTYR414
BALA415
BASP418
BHOH2376
BHOH2416
BHOH2417

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE 9PO B 1459
ChainResidue
BHOH2418
BALA148
BGLY149
BILE336
BASP348
BLEU400

Functional Information from PROSITE/UniProt
site_idPS00853
Number of Residues19
DetailsBETA_ELIM_LYASE Beta-eliminating lyases pyridoxal-phosphate attachment site. YaDgctMSGKKDcLVnIGG
ChainResidueDetails
ATYR247-GLY265

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine
ChainResidueDetails
ALYS257
BLYS257

Catalytic Information from CSA
site_idMCSA1
Number of Residues7
DetailsM-CSA 933
ChainResidueDetails
ATYR71proton acceptor, proton donor
APHE123steric role
ATHR124electrostatic stabiliser
AASP214electrostatic stabiliser
ALYS257covalently attached, electron pair acceptor, electron pair donor, nucleofuge, nucleophile, proton acceptor, proton donor
AARG381electrostatic stabiliser
APHE448electrostatic stabiliser, ground state destabiliser

site_idMCSA2
Number of Residues7
DetailsM-CSA 933
ChainResidueDetails
BTYR71proton acceptor, proton donor
BPHE123steric role
BTHR124electrostatic stabiliser
BASP214electrostatic stabiliser
BLYS257covalently attached, electron pair acceptor, electron pair donor, nucleofuge, nucleophile, proton acceptor, proton donor
BARG381electrostatic stabiliser
BPHE448electrostatic stabiliser, ground state destabiliser

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PDB entries from 2024-10-30

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