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2YC5

Inhibitors of the herbicidal target IspD

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008299biological_processisoprenoid biosynthetic process
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues13
DetailsBINDING SITE FOR RESIDUE 6BC A 1300
ChainResidue
AARG157
AVAL263
ASER264
AILE265
AVAL266
AGLN158
AILE177
AALA203
AGLN238
AVAL239
AVAL259
AASP261
AASP262

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CU A 1301
ChainResidue
ALYS123
AGLU141
AASP147
AHOH2044
AHOH2050
AHOH2070

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CU A 1302
ChainResidue
ALYS123
AGLU141
AASP147
AHOH2044
AHOH2050
AHOH2070

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 1303
ChainResidue
AGLU121
AGLU191
AHIS271
AACT1307

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CD A 1304
ChainResidue
AGLU167
AGLU167
AHOH2065
AHOH2065
AHOH2066
AHOH2066

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CU A 1305
ChainResidue
AASP290
AHOH2156
AHOH2158

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT A 1306
ChainResidue
ALEU292
AGLU295
AHOH2159
AHOH2160
AHOH2160

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE ACT A 1307
ChainResidue
APRO120
AGLU121
AGLU191
ALEU244
AHIS271
AMG1303
AZN1310
AHOH2084
AHOH2161
AHOH2162

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CD A 1308
ChainResidue
ALYS214
AASP261
AGLU267
AHOH2120
AHOH2138

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE NA A 1309
ChainResidue
AASP135

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1310
ChainResidue
AGLU121
AGLU191
AHIS271
AACT1307

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CD A 1311
ChainResidue
AGLU138
AGLU141
AASP169
AASN171
AHOH2036
AHOH2045

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VCIHDSAR
ChainResidueDetails
AVAL175-ARG182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsSITE: Transition state stabilizer => ECO:0000250
ChainResidueDetails
AARG91
ALYS98

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Positions MEP for the nucleophilic attack => ECO:0000250
ChainResidueDetails
AARG228
ALYS284

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PDB entries from 2024-07-31

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