Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2YBV

STRUCTURE OF RUBISCO FROM THERMOSYNECHOCOCCUS ELONGATUS

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0004497	molecular_function	monooxygenase activity
A	0005515	molecular_function	protein binding
A	0005737	cellular_component	cytoplasm
A	0009853	biological_process	photorespiration
A	0015977	biological_process	carbon fixation
A	0015979	biological_process	photosynthesis
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
A	0031470	cellular_component	carboxysome
A	0046872	molecular_function	metal ion binding
B	0009853	biological_process	photorespiration
B	0015977	biological_process	carbon fixation
B	0015979	biological_process	photosynthesis
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0019253	biological_process	reductive pentose-phosphate cycle
B	0031470	cellular_component	carboxysome
C	0000287	molecular_function	magnesium ion binding
C	0004497	molecular_function	monooxygenase activity
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0009853	biological_process	photorespiration
C	0015977	biological_process	carbon fixation
C	0015979	biological_process	photosynthesis
C	0016829	molecular_function	lyase activity
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0019253	biological_process	reductive pentose-phosphate cycle
C	0031470	cellular_component	carboxysome
C	0046872	molecular_function	metal ion binding
D	0009853	biological_process	photorespiration
D	0015977	biological_process	carbon fixation
D	0015979	biological_process	photosynthesis
D	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
D	0019253	biological_process	reductive pentose-phosphate cycle
D	0031470	cellular_component	carboxysome
E	0000287	molecular_function	magnesium ion binding
E	0004497	molecular_function	monooxygenase activity
E	0005515	molecular_function	protein binding
E	0005737	cellular_component	cytoplasm
E	0009853	biological_process	photorespiration
E	0015977	biological_process	carbon fixation
E	0015979	biological_process	photosynthesis
E	0016829	molecular_function	lyase activity
E	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
E	0019253	biological_process	reductive pentose-phosphate cycle
E	0031470	cellular_component	carboxysome
E	0046872	molecular_function	metal ion binding
F	0009853	biological_process	photorespiration
F	0015977	biological_process	carbon fixation
F	0015979	biological_process	photosynthesis
F	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
F	0019253	biological_process	reductive pentose-phosphate cycle
F	0031470	cellular_component	carboxysome
G	0000287	molecular_function	magnesium ion binding
G	0004497	molecular_function	monooxygenase activity
G	0005515	molecular_function	protein binding
G	0005737	cellular_component	cytoplasm
G	0009853	biological_process	photorespiration
G	0015977	biological_process	carbon fixation
G	0015979	biological_process	photosynthesis
G	0016829	molecular_function	lyase activity
G	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
G	0019253	biological_process	reductive pentose-phosphate cycle
G	0031470	cellular_component	carboxysome
G	0046872	molecular_function	metal ion binding
H	0009853	biological_process	photorespiration
H	0015977	biological_process	carbon fixation
H	0015979	biological_process	photosynthesis
H	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
H	0019253	biological_process	reductive pentose-phosphate cycle
H	0031470	cellular_component	carboxysome
I	0000287	molecular_function	magnesium ion binding
I	0004497	molecular_function	monooxygenase activity
I	0005515	molecular_function	protein binding
I	0005737	cellular_component	cytoplasm
I	0009853	biological_process	photorespiration
I	0015977	biological_process	carbon fixation
I	0015979	biological_process	photosynthesis
I	0016829	molecular_function	lyase activity
I	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
I	0019253	biological_process	reductive pentose-phosphate cycle
I	0031470	cellular_component	carboxysome
I	0046872	molecular_function	metal ion binding
J	0009853	biological_process	photorespiration
J	0015977	biological_process	carbon fixation
J	0015979	biological_process	photosynthesis
J	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
J	0019253	biological_process	reductive pentose-phosphate cycle
J	0031470	cellular_component	carboxysome
K	0000287	molecular_function	magnesium ion binding
K	0004497	molecular_function	monooxygenase activity
K	0005515	molecular_function	protein binding
K	0005737	cellular_component	cytoplasm
K	0009853	biological_process	photorespiration
K	0015977	biological_process	carbon fixation
K	0015979	biological_process	photosynthesis
K	0016829	molecular_function	lyase activity
K	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
K	0019253	biological_process	reductive pentose-phosphate cycle
K	0031470	cellular_component	carboxysome
K	0046872	molecular_function	metal ion binding
L	0009853	biological_process	photorespiration
L	0015977	biological_process	carbon fixation
L	0015979	biological_process	photosynthesis
L	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
L	0019253	biological_process	reductive pentose-phosphate cycle
L	0031470	cellular_component	carboxysome
M	0000287	molecular_function	magnesium ion binding
M	0004497	molecular_function	monooxygenase activity
M	0005515	molecular_function	protein binding
M	0005737	cellular_component	cytoplasm
M	0009853	biological_process	photorespiration
M	0015977	biological_process	carbon fixation
M	0015979	biological_process	photosynthesis
M	0016829	molecular_function	lyase activity
M	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
M	0019253	biological_process	reductive pentose-phosphate cycle
M	0031470	cellular_component	carboxysome
M	0046872	molecular_function	metal ion binding
N	0009853	biological_process	photorespiration
N	0015977	biological_process	carbon fixation
N	0015979	biological_process	photosynthesis
N	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
N	0019253	biological_process	reductive pentose-phosphate cycle
N	0031470	cellular_component	carboxysome
O	0000287	molecular_function	magnesium ion binding
O	0004497	molecular_function	monooxygenase activity
O	0005515	molecular_function	protein binding
O	0005737	cellular_component	cytoplasm
O	0009853	biological_process	photorespiration
O	0015977	biological_process	carbon fixation
O	0015979	biological_process	photosynthesis
O	0016829	molecular_function	lyase activity
O	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
O	0019253	biological_process	reductive pentose-phosphate cycle
O	0031470	cellular_component	carboxysome
O	0046872	molecular_function	metal ion binding
P	0009853	biological_process	photorespiration
P	0015977	biological_process	carbon fixation
P	0015979	biological_process	photosynthesis
P	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
P	0019253	biological_process	reductive pentose-phosphate cycle
P	0031470	cellular_component	carboxysome

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL A 1460

Chain	Residue
A	LYS305
A	HIS310

site_id	AC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL A 1461

Chain	Residue
A	ARG295

site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL C 1460

Chain	Residue
C	LYS305
C	HIS310
C	HOH2099

site_id	AC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL C 1461

Chain	Residue
C	ARG295

site_id	AC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL E 1460

Chain	Residue
E	ARG295

site_id	AC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL G 1460

Chain	Residue
G	HIS310
G	LYS305

site_id	AC7
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL G 1461

Chain	Residue
G	ARG295

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL I 1460

Chain	Residue
I	ARG134
I	LYS305
I	HIS310
I	HOH2022

site_id	AC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL I 1461

Chain	Residue
I	ARG295

site_id	BC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL K 1460

Chain	Residue
K	LYS305
K	HIS310

site_id	BC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL K 1461

Chain	Residue
K	ARG295

site_id	BC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL M 1460

Chain	Residue
M	ARG295

site_id	BC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE CL M 1461

Chain	Residue
M	LYS305
M	HIS310

site_id	BC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL O 1460

Chain	Residue
O	ARG134
O	LYS305
O	HIS310

site_id	BC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE CL O 1461

Chain	Residue
O	ARG295

Functional Information from PROSITE/UniProt

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE

Chain	Residue	Details
A	GLY196-GLU204

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	ACT_SITE: Proton acceptor => ECO:0000255\|HAMAP-Rule:MF_01338

Chain	Residue	Details
A	LYS175
I	HIS294
K	LYS175
K	HIS294
M	LYS175
M	HIS294
O	LYS175
O	HIS294
A	HIS294
C	LYS175
C	HIS294
E	LYS175
E	HIS294
G	LYS175
G	HIS294
I	LYS175

site_id	SWS_FT_FI2
Number of Residues	8
Details	BINDING: in homodimeric partner => ECO:0000255\|HAMAP-Rule:MF_01338

Chain	Residue	Details
A	ASN123
C	ASN123
E	ASN123
G	ASN123
I	ASN123
K	ASN123
M	ASN123
O	ASN123

site_id	SWS_FT_FI3
Number of Residues	56
Details	BINDING: BINDING => ECO:0000255\|HAMAP-Rule:MF_01338

Chain	Residue	Details
A	THR173
C	ASP203
C	GLU204
C	ARG295
C	HIS327
C	SER379
E	THR173
E	LYS177
E	ASP203
E	GLU204
E	ARG295
A	LYS177
E	HIS327
E	SER379
G	THR173
G	LYS177
G	ASP203
G	GLU204
G	ARG295
G	HIS327
G	SER379
I	THR173
A	ASP203
I	LYS177
I	ASP203
I	GLU204
I	ARG295
I	HIS327
I	SER379
K	THR173
K	LYS177
K	ASP203
K	GLU204
A	GLU204
K	ARG295
K	HIS327
K	SER379
M	THR173
M	LYS177
M	ASP203
M	GLU204
M	ARG295
M	HIS327
M	SER379
A	ARG295
O	THR173
O	LYS177
O	ASP203
O	GLU204
O	ARG295
O	HIS327
O	SER379
A	HIS327
A	SER379
C	THR173
C	LYS177

site_id	SWS_FT_FI4
Number of Residues	8
Details	BINDING: via carbamate group => ECO:0000255\|HAMAP-Rule:MF_01338

Chain	Residue	Details
A	LYS201
C	LYS201
E	LYS201
G	LYS201
I	LYS201
K	LYS201
M	LYS201
O	LYS201

site_id	SWS_FT_FI5
Number of Residues	8
Details	SITE: Transition state stabilizer => ECO:0000255\|HAMAP-Rule:MF_01338

Chain	Residue	Details
A	LYS334
C	LYS334
E	LYS334
G	LYS334
I	LYS334
K	LYS334
M	LYS334
O	LYS334

site_id	SWS_FT_FI6
Number of Residues	8
Details	MOD_RES: N6-carboxylysine => ECO:0000255\|HAMAP-Rule:MF_01338

Chain	Residue	Details
A	LYS201
C	LYS201
E	LYS201
G	LYS201
I	LYS201
K	LYS201
M	LYS201
O	LYS201

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)