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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

2YBA

Crystal structure of Nurf55 in complex with histone H3

Functional Information from GO Data
ChainGOidnamespacecontents
A0000122biological_processnegative regulation of transcription by RNA polymerase II
A0000785cellular_componentchromatin
A0000976molecular_functiontranscription cis-regulatory region binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005667cellular_componenttranscription regulator complex
A0005700cellular_componentpolytene chromosome
A0006325biological_processchromatin organization
A0006335biological_processDNA replication-dependent chromatin assembly
A0006338biological_processchromatin remodeling
A0006355biological_processregulation of DNA-templated transcription
A0007307biological_processeggshell chorion gene amplification
A0007346biological_processregulation of mitotic cell cycle
A0007379biological_processsegment specification
A0016581cellular_componentNuRD complex
A0016589cellular_componentNURF complex
A0031491molecular_functionnucleosome binding
A0031507biological_processheterochromatin formation
A0031523cellular_componentMyb complex
A0033186cellular_componentCAF-1 complex
A0034728biological_processnucleosome organization
A0035097cellular_componenthistone methyltransferase complex
A0035098cellular_componentESC/E(Z) complex
A0042393molecular_functionhistone binding
A0042803molecular_functionprotein homodimerization activity
A0042826molecular_functionhistone deacetylase binding
A0045892biological_processnegative regulation of DNA-templated transcription
A0045893biological_processpositive regulation of DNA-templated transcription
A0045944biological_processpositive regulation of transcription by RNA polymerase II
A0070176cellular_componentDRM complex
A0070822cellular_componentSin3-type complex
A0090575cellular_componentRNA polymerase II transcription regulator complex
A0140718biological_processfacultative heterochromatin formation
B0000122biological_processnegative regulation of transcription by RNA polymerase II
B0000785cellular_componentchromatin
B0000976molecular_functiontranscription cis-regulatory region binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005667cellular_componenttranscription regulator complex
B0005700cellular_componentpolytene chromosome
B0006325biological_processchromatin organization
B0006335biological_processDNA replication-dependent chromatin assembly
B0006338biological_processchromatin remodeling
B0006355biological_processregulation of DNA-templated transcription
B0007307biological_processeggshell chorion gene amplification
B0007346biological_processregulation of mitotic cell cycle
B0007379biological_processsegment specification
B0016581cellular_componentNuRD complex
B0016589cellular_componentNURF complex
B0031491molecular_functionnucleosome binding
B0031507biological_processheterochromatin formation
B0031523cellular_componentMyb complex
B0033186cellular_componentCAF-1 complex
B0034728biological_processnucleosome organization
B0035097cellular_componenthistone methyltransferase complex
B0035098cellular_componentESC/E(Z) complex
B0042393molecular_functionhistone binding
B0042803molecular_functionprotein homodimerization activity
B0042826molecular_functionhistone deacetylase binding
B0045892biological_processnegative regulation of DNA-templated transcription
B0045893biological_processpositive regulation of DNA-templated transcription
B0045944biological_processpositive regulation of transcription by RNA polymerase II
B0070176cellular_componentDRM complex
B0070822cellular_componentSin3-type complex
B0090575cellular_componentRNA polymerase II transcription regulator complex
B0140718biological_processfacultative heterochromatin formation
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0030527molecular_functionstructural constituent of chromatin
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0030527molecular_functionstructural constituent of chromatin
Functional Information from PROSITE/UniProt
site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LLSAsdDhTICLWDI
ChainResidueDetails
ALEU197-ILE211
ALEU293-LEU307
ALEU337-LEU351
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues66
DetailsRepeat: {"description":"WD 1"}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues62
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues62
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues62
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues62
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues62
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17372656","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18327897","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues10
DetailsRegion: {"description":"Su(var)205 chromodomain-binding"}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues2
DetailsModified residue: {"description":"Phosphothreonine; by Haspin","evidences":[{"source":"PubMed","id":"32750047","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues2
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"14732680","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15175259","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues3
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"PubMed","id":"14732680","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"11114889","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11266459","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11371341","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12514098","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15175259","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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