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2YB1

Structure of an amidohydrolase from Chromobacterium violaceum (EFI target EFI-500202) with bound Mn, AMP and phosphate.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003824molecular_functioncatalytic activity
A0004534molecular_function5'-3' RNA exonuclease activity
A0006259biological_processDNA metabolic process
A0016311biological_processdephosphorylation
A0016787molecular_functionhydrolase activity
A0030145molecular_functionmanganese ion binding
A0035312molecular_function5'-3' DNA exonuclease activity
A0046872molecular_functionmetal ion binding
A0097657molecular_function3',5'-nucleotide bisphosphate phosphatase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 1289
ChainResidue
AASP14
AHIS39
AHIS250
AAMP1292
APO41293

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 1290
ChainResidue
AMN1291
APO41293
AHIS7
AHIS9
AGLU64
AASP248

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 1291
ChainResidue
AGLU64
AHIS75
AHIS191
AMN1290
APO41293

site_idAC4
Number of Residues14
DetailsBINDING SITE FOR RESIDUE AMP A 1292
ChainResidue
AASP14
AHIS39
AARG99
AARG102
ASER133
AARG134
ATHR135
APHE154
AHIS250
AMN1289
APO41293
AHOH2268
AHOH2269
AHOH2270

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE PO4 A 1293
ChainResidue
AHIS7
AHIS9
AHIS39
AGLU64
AHIS75
AHIS191
AARG194
AASP248
AHIS250
AMN1289
AMN1290
AMN1291
AAMP1292
AHOH2271

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues13
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"24401123","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2YB1","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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