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2YB0

The Crystal Structure of Leishmania major dUTPase in complex deoxyuridine

Functional Information from GO Data
ChainGOidnamespacecontents
A0004170molecular_functiondUTP diphosphatase activity
A0005654cellular_componentnucleoplasm
A0016787molecular_functionhydrolase activity
A0046872molecular_functionmetal ion binding
B0004170molecular_functiondUTP diphosphatase activity
B0005654cellular_componentnucleoplasm
B0016787molecular_functionhydrolase activity
B0046872molecular_functionmetal ion binding
D0004170molecular_functiondUTP diphosphatase activity
D0005654cellular_componentnucleoplasm
D0016787molecular_functionhydrolase activity
D0046872molecular_functionmetal ion binding
E0004170molecular_functiondUTP diphosphatase activity
E0005654cellular_componentnucleoplasm
E0016787molecular_functionhydrolase activity
E0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE DUR A 1266
ChainResidue
AGLN21
AASN183
ASO41267
AHOH2029
BTRP60
BTRP61
ALEU24
AASN25
AILE28
ATRP41
AGLU48
AASP79
AHIS82
APHE83

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 1267
ChainResidue
AARG186
ATYR191
ALYS198
ADUR1266
AHOH2006
AHOH2038
BLYS59
BTRP61
BLYS62

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1268
ChainResidue
ASO41269
AHOH2039
BLYS59
BLYS62
BASN63

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1269
ChainResidue
AVAL197
ALYS198
AVAL199
ASO41268
BLYS62

site_idAC5
Number of Residues14
DetailsBINDING SITE FOR RESIDUE DUR B 1266
ChainResidue
ATRP60
ATRP61
BGLN21
BLEU24
BASN25
BILE28
BTRP41
BASP79
BHIS82
BPHE83
BASN183
BSO41267
BHOH2015
BHOH2018

site_idAC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 1267
ChainResidue
ALYS59
ATRP61
ALYS62
BARG186
BTYR191
BLYS198
BDUR1266
BSO41268
BHOH2019

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 1268
ChainResidue
ALYS59
ALYS62
AASN63
BSO41267

site_idAC8
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DUR D 1266
ChainResidue
DGLN21
DLEU24
DASN25
DILE28
DTRP41
DASP79
DHIS82
DPHE83
DASN183
DARG186
DSO41267
ETRP60
ETRP61

site_idAC9
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 D 1267
ChainResidue
DARG186
DTYR191
DLYS198
DDUR1266
DHOH2023
ELYS59
ETRP61
ELYS62

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 1268
ChainResidue
ELYS59
ELYS62
EASN63

site_idBC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DUR E 1266
ChainResidue
DTRP60
DTRP61
EGLN21
ELEU24
EASN25
EILE28
ETRP41
EASP79
EHIS82
EPHE83
EASN183
ESO41267
EHOH2011

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 E 1267
ChainResidue
DLYS62
EARG186
ETYR191
ELYS198
EDUR1266
EHOH2015
DLYS59
DTRP61

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 E 1268
ChainResidue
DLYS59
DLYS62
DASN63

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PDB entries from 2025-07-30

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