2Y3I
The structure of the fully closed conformation of human PGK in complex with L-ADP, 3PG and the TSA aluminium tetrafluoride
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004618 | molecular_function | phosphoglycerate kinase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005524 | molecular_function | ATP binding |
A | 0005615 | cellular_component | extracellular space |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006094 | biological_process | gluconeogenesis |
A | 0006096 | biological_process | glycolytic process |
A | 0016020 | cellular_component | membrane |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0016525 | biological_process | negative regulation of angiogenesis |
A | 0030855 | biological_process | epithelial cell differentiation |
A | 0031639 | biological_process | plasminogen activation |
A | 0043531 | molecular_function | ADP binding |
A | 0045121 | cellular_component | membrane raft |
A | 0047134 | molecular_function | protein-disulfide reductase (NAD(P)H) activity |
A | 0061621 | biological_process | canonical glycolysis |
A | 0070062 | cellular_component | extracellular exosome |
A | 0071456 | biological_process | cellular response to hypoxia |
D | 0004618 | molecular_function | phosphoglycerate kinase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005524 | molecular_function | ATP binding |
D | 0005615 | cellular_component | extracellular space |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006094 | biological_process | gluconeogenesis |
D | 0006096 | biological_process | glycolytic process |
D | 0016020 | cellular_component | membrane |
D | 0016301 | molecular_function | kinase activity |
D | 0016310 | biological_process | phosphorylation |
D | 0016525 | biological_process | negative regulation of angiogenesis |
D | 0030855 | biological_process | epithelial cell differentiation |
D | 0031639 | biological_process | plasminogen activation |
D | 0043531 | molecular_function | ADP binding |
D | 0045121 | cellular_component | membrane raft |
D | 0047134 | molecular_function | protein-disulfide reductase (NAD(P)H) activity |
D | 0061621 | biological_process | canonical glycolysis |
D | 0070062 | cellular_component | extracellular exosome |
D | 0071456 | biological_process | cellular response to hypoxia |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG A 1416 |
Chain | Residue |
A | ASP374 |
A | LA81418 |
A | ALF1419 |
site_id | AC2 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE LA8 D 1416 |
Chain | Residue |
D | GLY340 |
D | GLU343 |
D | GLY372 |
D | GLY373 |
D | ASP374 |
D | THR375 |
D | ALF1417 |
D | MG1418 |
D | GLY213 |
D | ALA214 |
D | LYS215 |
D | LYS219 |
D | ASN336 |
D | PRO338 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL A 1417 |
Chain | Residue |
A | LYS215 |
A | ALA217 |
A | ASP218 |
site_id | AC4 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE ALF D 1417 |
Chain | Residue |
D | ARG38 |
D | LYS215 |
D | LYS219 |
D | GLY372 |
D | GLY373 |
D | GLY395 |
D | GLY396 |
D | LA81416 |
D | MG1418 |
D | 3PG1420 |
D | HOH2005 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG D 1418 |
Chain | Residue |
D | ASP374 |
D | LA81416 |
D | ALF1417 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL D 1419 |
Chain | Residue |
D | ARG65 |
D | LYS215 |
D | ASP218 |
site_id | AC7 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE LA8 A 1418 |
Chain | Residue |
A | GLY213 |
A | ALA214 |
A | LYS215 |
A | LYS219 |
A | PHE291 |
A | ASN336 |
A | PRO338 |
A | GLY340 |
A | VAL341 |
A | PHE342 |
A | GLU343 |
A | GLY372 |
A | GLY373 |
A | ASP374 |
A | THR375 |
A | MG1416 |
A | ALF1419 |
A | HOH2008 |
site_id | AC8 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE ALF A 1419 |
Chain | Residue |
A | ARG38 |
A | LYS215 |
A | LYS219 |
A | GLY372 |
A | GLY373 |
A | ASP374 |
A | GLY395 |
A | GLY396 |
A | MG1416 |
A | LA81418 |
A | 3PG1420 |
site_id | AC9 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE 3PG D 1420 |
Chain | Residue |
D | ASP23 |
D | ASN25 |
D | ARG38 |
D | HIS62 |
D | ARG65 |
D | ARG122 |
D | GLY166 |
D | ARG170 |
D | LYS215 |
D | ALF1417 |
D | HOH2005 |
site_id | BC1 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE 3PG A 1420 |
Chain | Residue |
A | ASP23 |
A | ASN25 |
A | ARG38 |
A | HIS62 |
A | ARG65 |
A | ARG122 |
A | GLY166 |
A | ARG170 |
A | LYS215 |
A | ALF1419 |
Functional Information from PROSITE/UniProt
site_id | PS00111 |
Number of Residues | 11 |
Details | PGLYCERATE_KINASE Phosphoglycerate kinase signature. RVVMRvDfNVP |
Chain | Residue | Details |
A | ARG17-PRO27 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 18 |
Details | BINDING: BINDING => ECO:0000269|PubMed:18463139 |
Chain | Residue | Details |
A | ASP23 | |
D | ASP23 | |
D | ARG38 | |
D | HIS62 | |
D | ARG122 | |
D | ARG170 | |
D | LYS219 | |
D | GLY312 | |
D | GLU343 | |
D | GLY372 | |
A | ARG38 | |
A | HIS62 | |
A | ARG122 | |
A | ARG170 | |
A | LYS219 | |
A | GLY312 | |
A | GLU343 | |
A | GLY372 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
A | SER1 | |
A | SER3 | |
D | SER1 | |
D | SER3 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | MOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P09411 |
Chain | Residue | Details |
A | LYS5 | |
A | LYS190 | |
D | LYS5 | |
D | LYS190 |
site_id | SWS_FT_FI4 |
Number of Residues | 14 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS10 | |
D | LYS85 | |
D | LYS145 | |
D | LYS198 | |
D | LYS266 | |
D | LYS290 | |
A | LYS74 | |
A | LYS85 | |
A | LYS145 | |
A | LYS198 | |
A | LYS266 | |
A | LYS290 | |
D | LYS10 | |
D | LYS74 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P09411 |
Chain | Residue | Details |
A | LYS47 | |
D | LYS47 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P09411 |
Chain | Residue | Details |
A | TYR75 | |
D | TYR75 |
site_id | SWS_FT_FI7 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P09411 |
Chain | Residue | Details |
A | LYS90 | |
A | LYS360 | |
D | LYS90 | |
D | LYS360 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine; alternate => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS96 | |
D | LYS96 |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | MOD_RES: N6-malonyllysine; alternate => ECO:0000269|PubMed:21908771 |
Chain | Residue | Details |
A | LYS130 | |
D | LYS130 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: Phosphotyrosine => ECO:0007744|PubMed:15592455 |
Chain | Residue | Details |
A | TYR195 | |
D | TYR195 |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569 |
Chain | Residue | Details |
A | SER202 | |
D | SER202 |
site_id | SWS_FT_FI12 |
Number of Residues | 4 |
Details | MOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000269|PubMed:29775581 |
Chain | Residue | Details |
A | LYS215 | |
A | LYS322 | |
D | LYS215 | |
D | LYS322 |
site_id | SWS_FT_FI13 |
Number of Residues | 2 |
Details | MOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000269|PubMed:29192674 |
Chain | Residue | Details |
A | LYS219 | |
D | LYS219 |