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2XCS

The 2.1A crystal structure of S. aureus Gyrase complex with GSK299423 and DNA

Functional Information from GO Data
ChainGOidnamespacecontents
B0003677molecular_functionDNA binding
B0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
B0005524molecular_functionATP binding
B0006259biological_processDNA metabolic process
B0006265biological_processDNA topological change
D0003677molecular_functionDNA binding
D0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
D0005524molecular_functionATP binding
D0006259biological_processDNA metabolic process
D0006265biological_processDNA topological change
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE RXV F 1021
ChainResidue
BALA1068
DMET1121
DHOH2089
EDG10
EDC11
FDG10
FDC11
FHOH2035
BMET1075
BASP1083
BMET1121
BHOH2110
DALA1068
DGLY1072
DMET1075
DASP1083

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN D 2491
ChainResidue
DGLU435
DASP508
DHOH2366
DHOH2367
FDG8
FDG9

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN E 1022
ChainResidue
DHIS1390
E5UA1
EHOH2038
EHOH2039
EHOH2040

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 2492
ChainResidue
BTYR1322
BLYS1323
BTHR1325
BGLN1328
BHOH2384
BHOH2385

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 2493
ChainResidue
BGLU435
BASP508
BHOH2386
BHOH2387
EDG8
EDG9

Functional Information from PROSITE/UniProt
site_idPS00177
Number of Residues9
DetailsTOPOISOMERASE_II DNA topoisomerase II signature. LVEGDSAGG
ChainResidueDetails
BLEU433-GLY441

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BGLU435
BASP508
BASP510
DGLU435
DASP508
DASP510

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with DNA => ECO:0000255|HAMAP-Rule:MF_01898
ChainResidueDetails
BLYS460
BASN463
DLYS460
DASN463

site_idSWS_FT_FI3
Number of Residues2
DetailsACT_SITE: O-(5'-phospho-DNA)-tyrosine intermediate => ECO:0000255|HAMAP-Rule:MF_01897
ChainResidueDetails
BPHE1123
DPHE1123

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PDB entries from 2024-07-10

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