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2X5W

X-ray structure of Mycobacterium tuberculosis cytochrome P450 CYP125 in complex with substrate cholest-4-en-3-one

Functional Information from GO Data
ChainGOidnamespacecontents
A0004497molecular_functionmonooxygenase activity
A0005506molecular_functioniron ion binding
A0006629biological_processlipid metabolic process
A0006707biological_processcholesterol catabolic process
A0008202biological_processsteroid metabolic process
A0008203biological_processcholesterol metabolic process
A0008395molecular_functionsteroid hydroxylase activity
A0016042biological_processlipid catabolic process
A0016491molecular_functionoxidoreductase activity
A0016705molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
A0020037molecular_functionheme binding
A0036199molecular_functioncholest-4-en-3-one 26-monooxygenase activity
A0046872molecular_functionmetal ion binding
A0051701biological_processbiological process involved in interaction with host
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 1428
ChainResidue
AARG84
AHIS85
AHIS195
AASN198
ATYR208
AHOH2226
AHOH2239
AHOH2432

site_idAC2
Number of Residues10
DetailsBINDING SITE FOR RESIDUE K2B A 1429
ChainResidue
AGLN112
AMET200
APRO213
ALYS214
AVAL267
AALA268
ATRP414
AHEM1431
AHOH2434
AASP108

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1430
ChainResidue
AHIS210
ATYR376
AALA380
AASN381
AARG384
AHOH2388

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE HEM A 1431
ChainResidue
AMET116
ALEU117
AHIS124
AARG128
AILE179
AMET264
AALA268
ATHR272
ATHR273
APRO312
APHE316
AARG318
AGLY368
APHE369
AGLY370
AHIS375
ACYS377
AILE378
AGLY379
AALA383
AK2B1429
AHOH2344
AHOH2436
AHOH2437
AHOH2438

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:19846552, ECO:0007744|PDB:3IW1
ChainResidueDetails
AGLY202

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: axial binding residue => ECO:0000269|PubMed:20545858, ECO:0007744|PDB:2X5L, ECO:0007744|PDB:2X5W, ECO:0007744|PDB:2XC3, ECO:0007744|PDB:2XN8, ECO:0007744|PDB:3IVY, ECO:0007744|PDB:3IW0, ECO:0007744|PDB:3IW1, ECO:0007744|PDB:3IW2
ChainResidueDetails
ACYS377

218853

PDB entries from 2024-04-24

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