2WV0
Crystal structure of the GntR-HutC family member YvoA from Bacillus subtilis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003700 | molecular_function | DNA-binding transcription factor activity |
| A | 0006351 | biological_process | DNA-templated transcription |
| A | 0006355 | biological_process | regulation of DNA-templated transcription |
| A | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| B | 0003677 | molecular_function | DNA binding |
| B | 0003700 | molecular_function | DNA-binding transcription factor activity |
| B | 0006351 | biological_process | DNA-templated transcription |
| B | 0006355 | biological_process | regulation of DNA-templated transcription |
| B | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| C | 0003677 | molecular_function | DNA binding |
| C | 0003700 | molecular_function | DNA-binding transcription factor activity |
| C | 0006351 | biological_process | DNA-templated transcription |
| C | 0006355 | biological_process | regulation of DNA-templated transcription |
| C | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| D | 0003677 | molecular_function | DNA binding |
| D | 0003700 | molecular_function | DNA-binding transcription factor activity |
| D | 0006351 | biological_process | DNA-templated transcription |
| D | 0006355 | biological_process | regulation of DNA-templated transcription |
| D | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| E | 0003677 | molecular_function | DNA binding |
| E | 0003700 | molecular_function | DNA-binding transcription factor activity |
| E | 0006351 | biological_process | DNA-templated transcription |
| E | 0006355 | biological_process | regulation of DNA-templated transcription |
| E | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| F | 0003677 | molecular_function | DNA binding |
| F | 0003700 | molecular_function | DNA-binding transcription factor activity |
| F | 0006351 | biological_process | DNA-templated transcription |
| F | 0006355 | biological_process | regulation of DNA-templated transcription |
| F | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| G | 0003677 | molecular_function | DNA binding |
| G | 0003700 | molecular_function | DNA-binding transcription factor activity |
| G | 0006351 | biological_process | DNA-templated transcription |
| G | 0006355 | biological_process | regulation of DNA-templated transcription |
| G | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| H | 0003677 | molecular_function | DNA binding |
| H | 0003700 | molecular_function | DNA-binding transcription factor activity |
| H | 0006351 | biological_process | DNA-templated transcription |
| H | 0006355 | biological_process | regulation of DNA-templated transcription |
| H | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| I | 0003677 | molecular_function | DNA binding |
| I | 0003700 | molecular_function | DNA-binding transcription factor activity |
| I | 0006351 | biological_process | DNA-templated transcription |
| I | 0006355 | biological_process | regulation of DNA-templated transcription |
| I | 0045892 | biological_process | negative regulation of DNA-templated transcription |
| J | 0003677 | molecular_function | DNA binding |
| J | 0003700 | molecular_function | DNA-binding transcription factor activity |
| J | 0006351 | biological_process | DNA-templated transcription |
| J | 0006355 | biological_process | regulation of DNA-templated transcription |
| J | 0045892 | biological_process | negative regulation of DNA-templated transcription |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 I 1243 |
| Chain | Residue |
| A | GLN108 |
| A | LYS130 |
| I | PRO10 |
| I | ILE11 |
| I | TYR12 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1243 |
| Chain | Residue |
| D | GLN108 |
| D | LYS130 |
| B | PRO10 |
| B | ILE11 |
| B | TYR12 |
| B | THR50 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 D 1243 |
| Chain | Residue |
| B | GLN108 |
| B | LYS130 |
| D | PRO10 |
| D | ILE11 |
| D | TYR12 |
| D | THR50 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE SO4 B 1244 |
| Chain | Residue |
| B | SER88 |
| B | PHE89 |
| B | THR90 |
| B | ARG133 |
| B | ARG135 |
| B | SER165 |
| B | ILE166 |
| B | TYR167 |
| B | HOH2098 |
| B | HOH2109 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 C 1243 |
| Chain | Residue |
| C | PRO10 |
| C | ILE11 |
| C | TYR12 |
| C | THR50 |
| F | GLN108 |
| F | LYS130 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 F 1243 |
| Chain | Residue |
| C | GLN108 |
| C | LYS130 |
| F | PRO10 |
| F | ILE11 |
| F | TYR12 |
| F | THR50 |
| F | HOH2092 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 G 1243 |
| Chain | Residue |
| E | GLN108 |
| G | PRO10 |
| G | ILE11 |
| G | TYR12 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 C 1244 |
| Chain | Residue |
| C | SER88 |
| C | PHE89 |
| C | THR90 |
| C | ARG133 |
| C | ARG135 |
| C | SER165 |
| C | ILE166 |
| C | TYR167 |
| C | HOH2103 |
| site_id | AC9 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE SO4 D 1244 |
| Chain | Residue |
| D | SER88 |
| D | PHE89 |
| D | THR90 |
| D | ARG133 |
| D | ARG135 |
| D | SER164 |
| D | SER165 |
| D | ILE166 |
| D | TYR167 |
| D | HOH2113 |
| site_id | BC1 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE SO4 E 1243 |
| Chain | Residue |
| E | SER88 |
| E | PHE89 |
| E | THR90 |
| E | ARG133 |
| E | ARG135 |
| E | SER164 |
| E | SER165 |
| E | ILE166 |
| E | TYR167 |
| E | HOH2050 |
| site_id | BC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 F 1244 |
| Chain | Residue |
| F | SER88 |
| F | PHE89 |
| F | THR90 |
| F | ARG133 |
| F | ARG135 |
| F | SER165 |
| F | ILE166 |
| F | TYR167 |
| F | HOH2093 |
| site_id | BC3 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 G 1244 |
| Chain | Residue |
| G | SER88 |
| G | PHE89 |
| G | THR90 |
| G | ARG133 |
| G | ARG135 |
| G | SER165 |
| G | ILE166 |
| G | TYR167 |
| G | HOH2038 |
| site_id | BC4 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE SO4 I 1244 |
| Chain | Residue |
| I | TYR167 |
| I | HOH2080 |
| I | SER88 |
| I | PHE89 |
| I | THR90 |
| I | ARG133 |
| I | ARG135 |
| I | SER164 |
| I | SER165 |
| I | ILE166 |
| site_id | BC5 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1244 |
| Chain | Residue |
| A | SER88 |
| A | PHE89 |
| A | THR90 |
| A | ARG133 |
| A | ARG135 |
| A | SER165 |
| A | ILE166 |
| A | TYR167 |
| A | HOH2070 |
| site_id | BC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1245 |
| Chain | Residue |
| A | PRO10 |
| A | ILE11 |
| A | TYR12 |
| A | THR50 |
| I | GLN108 |
| I | LYS130 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 408 |
| Details | Domain: {"description":"HTH gntR-type","evidences":[{"source":"PROSITE-ProRule","id":"PRU00307","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 171 |
| Details | DNA binding: {"description":"H-T-H motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU00307","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 80 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"25564531","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4U0W","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
