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2WJV

Crystal structure of the complex between human nonsense mediated decay factors UPF1 and UPF2

Functional Information from GO Data
ChainGOidnamespacecontents
A0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
A0003677molecular_functionDNA binding
A0003723molecular_functionRNA binding
A0003724molecular_functionRNA helicase activity
A0004386molecular_functionhelicase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0008270molecular_functionzinc ion binding
A0016787molecular_functionhydrolase activity
B0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
B0003677molecular_functionDNA binding
B0003723molecular_functionRNA binding
B0003724molecular_functionRNA helicase activity
B0004386molecular_functionhelicase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0008270molecular_functionzinc ion binding
B0016787molecular_functionhydrolase activity
D0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
E0000184biological_processnuclear-transcribed mRNA catabolic process, nonsense-mediated decay
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 1
ChainResidue
ACYS123
ACYS126
ACYS145
AHIS155

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 2
ChainResidue
ACYS137
ASER140
AHIS159
ACYS165

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN A 3
ChainResidue
ACYS186
ACYS209
ACYS213
ACYS183

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 987
ChainResidue
AGLY497
ALYS498
ATHR499
AVAL500

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 988
ChainResidue
AGLY901
APRO902
AARG907

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 989
ChainResidue
AMET357
ASER523
AASN524
AILE525
AARG549

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 990
ChainResidue
APRO494
AGLN665
AARG703
AGLY831
AARG865

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 991
ChainResidue
ATYR764
AARG843
AHIS847
AGLN848
AGLY849

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 992
ChainResidue
AARG767

site_idBC1
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A 993
ChainResidue
AARG832

site_idBC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 994
ChainResidue
AASN472
AHIS473

site_idBC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 995
ChainResidue
AARG462
APHE463
ATHR464

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 996
ChainResidue
ATHR794
APRO795
ASER825
AVAL826
AASP827
AGLY851
APHE852
AARG858

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 997
ChainResidue
ASER763
APRO795
ATYR796
AGLU797
AILE850

site_idBC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 998
ChainResidue
ATHR418
AARG422
APRO623

site_idBC7
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 999
ChainResidue
ALEU544
ACYS545
AALA546
AGLU550
ALEU561
AHIS562
AARG624

site_idBC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 1
ChainResidue
BCYS123
BCYS126
BCYS145
BHIS155

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 2
ChainResidue
BCYS137
BSER140
BHIS159
BCYS165

site_idCC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE ZN B 3
ChainResidue
BCYS183
BCYS186
BCYS209
BCYS213

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 989
ChainResidue
BASN472
BHIS473

site_idCC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 990
ChainResidue
BGLY497
BTHR499
BVAL500

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 991
ChainResidue
BTYR764
BARG843
BHIS847
BGLN848
BGLY849

site_idCC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 992
ChainResidue
BARG767

site_idCC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 B 993
ChainResidue
BARG832

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 995
ChainResidue
BARG462
BPHE463
BTHR464

site_idCC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 996
ChainResidue
BTHR794
BPRO795
BSER825
BVAL826
BASP827
BGLY851
BPHE852
BARG858

site_idCC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 997
ChainResidue
BSER763
BPRO795
BTYR796
BGLU797
BILE850

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 998
ChainResidue
BSER523
BASN524
BILE525
BARG549

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 999
ChainResidue
BPRO494
BGLN665
BARG703
BGLY831
BARG865

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues24
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01341
ChainResidueDetails
ACYS123
ACYS186
ACYS209
ACYS213
BCYS123
BCYS126
BCYS137
BSER140
BCYS145
BHIS155
BHIS159
ACYS126
BCYS165
BCYS183
BCYS186
BCYS209
BCYS213
ACYS137
ASER140
ACYS145
AHIS155
AHIS159
ACYS165
ACYS183

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:21419344
ChainResidueDetails
APRO486
AALA676
ASER713
AALA844
BPRO486
BALA676
BSER713
BALA844

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0007744|PDB:2GJK
ChainResidueDetails
AVAL506
BVAL506

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
AILE565
BILE565

237423

PDB entries from 2025-06-11

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