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2VP0

Structural Studies of Nucleoside Analog and Feedback Inhibitor Binding to Drosophila Melanogaster Multisubstrate Deoxyribonucleoside Kinase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004136molecular_functiondeoxyadenosine kinase activity
A0004137molecular_functiondeoxycytidine kinase activity
A0004138molecular_functiondeoxyguanosine kinase activity
A0004797molecular_functionthymidine kinase activity
A0004849molecular_functionuridine kinase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005739cellular_componentmitochondrion
A0006139biological_processnucleobase-containing compound metabolic process
A0006170biological_processdAMP biosynthetic process
A0006222biological_processUMP biosynthetic process
A0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
A0009224biological_processCMP biosynthetic process
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
A0019136molecular_functiondeoxynucleoside kinase activity
A0043174biological_processnucleoside salvage
A0043771molecular_functioncytidine kinase activity
A0071897biological_processDNA biosynthetic process
A1901293biological_processnucleoside phosphate biosynthetic process
B0000166molecular_functionnucleotide binding
B0004136molecular_functiondeoxyadenosine kinase activity
B0004137molecular_functiondeoxycytidine kinase activity
B0004138molecular_functiondeoxyguanosine kinase activity
B0004797molecular_functionthymidine kinase activity
B0004849molecular_functionuridine kinase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005739cellular_componentmitochondrion
B0006139biological_processnucleobase-containing compound metabolic process
B0006170biological_processdAMP biosynthetic process
B0006222biological_processUMP biosynthetic process
B0009157biological_processdeoxyribonucleoside monophosphate biosynthetic process
B0009224biological_processCMP biosynthetic process
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0016740molecular_functiontransferase activity
B0019136molecular_functiondeoxynucleoside kinase activity
B0043174biological_processnucleoside salvage
B0043771molecular_functioncytidine kinase activity
B0071897biological_processDNA biosynthetic process
B1901293biological_processnucleoside phosphate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A1209
ChainResidue
ATHR34
AGLU52
AGLU104
ATTP1210
AHOH2007

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG B1209
ChainResidue
BTHR34
BGLU52
BGLU104
BTTP1210

site_idAC3
Number of Residues28
DetailsBINDING SITE FOR RESIDUE TTP A1210
ChainResidue
AILE29
AGLY30
ASER31
AGLY32
ALYS33
ATHR34
AGLU52
AVAL54
ATRP57
ALEU66
AMET69
ATYR70
APHE80
AGLN81
AVAL84
AGLU104
AARG105
AALA110
APHE114
AARG167
AARG169
AGLU172
AMG1209
AHOH2007
AHOH2058
AHOH2071
AHOH2072
AHOH2073

site_idAC4
Number of Residues25
DetailsBINDING SITE FOR RESIDUE TTP B1210
ChainResidue
BILE29
BGLY30
BSER31
BGLY32
BLYS33
BTHR34
BGLU52
BTRP57
BLEU66
BMET69
BTYR70
BPHE80
BGLN81
BGLU104
BARG105
BALA110
BPHE114
BARG167
BARG169
BGLU172
BMG1209
BHOH2042
BHOH2048
BHOH2049
BHOH2050

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton acceptor => ECO:0000255
ChainResidueDetails
AGLU104
BGLU104

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY27
BGLY27

site_idSWS_FT_FI3
Number of Residues10
DetailsBINDING:
ChainResidueDetails
AGLU52
BGLU172
ATYR70
AGLN81
AARG105
AGLU172
BGLU52
BTYR70
BGLN81
BARG105

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:18327897
ChainResidueDetails
ASER236
ASER243
BSER236
BSER243

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:17372656
ChainResidueDetails
ASER241
BSER241

218853

PDB entries from 2024-04-24

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