Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2VN9

Crystal Structure of Human Calcium Calmodulin dependent Protein Kinase II delta isoform 1, CAMKD

Functional Information from GO Data
ChainGOidnamespacecontents
A0004672molecular_functionprotein kinase activity
A0005524molecular_functionATP binding
A0006468biological_processprotein phosphorylation
B0004672molecular_functionprotein kinase activity
B0005524molecular_functionATP binding
B0006468biological_processprotein phosphorylation
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GVD B 1310
ChainResidue
BLEU20
BLYS22
BALA41
BLYS43
BASP91
BLEU92
BVAL93
BASP157
BPO41312

site_idAC2
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GVD A 1314
ChainResidue
ALEU20
ALYS22
AVAL28
AALA41
ALYS43
APHE90
AASP91
ALEU92
AVAL93
AASP157
APO41311

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 1310
ChainResidue
ATHR47
AHIS55
ASER81
AGLU82
APHE85
AHIS86
ASER148
ALYS149
AHOH2072

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 B 1311
ChainResidue
BTHR47
BHIS55
BSER81
BGLU82
BPHE85
BHIS86
BSER148
BLYS149

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 B 1312
ChainResidue
BLEU20
BGVD1310

site_idAC6
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 1311
ChainResidue
ALEU20
AGLY21
AGVD1314
AHOH2073

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 1312
ChainResidue
AARG75
AHIS77

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE EPE A 1313
ChainResidue
ATYR107
ASER109
AALA111
AASP112
AARG275
ASER276
AMET281
AHOH2029

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues24
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGKGAFSVVRrCmkiptgqe..........YAAK
ChainResidueDetails
ALEU20-LYS43

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IvHrDLKpeNLLL
ChainResidueDetails
AILE132-LEU144

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues516
DetailsDomain: {"description":"Protein kinase","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsRegion: {"description":"Autoinhibitory domain","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues20
DetailsRegion: {"description":"Calmodulin-binding","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10027","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00159","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"Phosphothreonine; by autocatalysis","evidences":[{"source":"PubMed","id":"16690701","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues4
DetailsModified residue: {"description":"Phosphothreonine; by autocatalysis","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
AASP136
AGLU140

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BASP136
BGLU140

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
AASP136
ALYS138

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BASP136
BLYS138

site_idCSA5
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
AASP136
ALYS138
ATHR177

site_idCSA6
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BASP136
BLYS138
BTHR177

site_idCSA7
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
AASP136
ALYS138
AASN141

site_idCSA8
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ir3
ChainResidueDetails
BASP136
BLYS138
BASN141

246704

PDB entries from 2025-12-24

PDB statisticsPDBj update infoContact PDBjnumon