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2VM9

Native structure of the recombinant discoidin II of Dictyostelium discoideum at 1.75 angstrom

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0007010biological_processcytoskeleton organization
A0007155biological_processcell adhesion
A0009617biological_processresponse to bacterium
A0009986cellular_componentcell surface
A0016936molecular_functiongalactoside binding
A0030246molecular_functioncarbohydrate binding
A0030247molecular_functionpolysaccharide binding
A0031012cellular_componentextracellular matrix
A0031160cellular_componentspore wall
A0031982cellular_componentvesicle
A0045335cellular_componentphagocytic vesicle
A0046871molecular_functionN-acetylgalactosamine binding
A0046872molecular_functionmetal ion binding
A0070492molecular_functionoligosaccharide binding
A0098609biological_processcell-cell adhesion
A0098636cellular_componentprotein complex involved in cell adhesion
A0140582biological_processadenylate cyclase-activating G protein-coupled cAMP receptor signaling pathway
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA A 500
ChainResidue
AASN39
ASER40
AASP47
AHOH2070
AHOH2072
AHOH2088
AHOH2091

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MPD A 502
ChainResidue
AGLN86
AHIS144
APO4507
AHOH2362
AHOH2363
ATYR24
AARG81

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MPD A 503
ChainResidue
AASP85
AGLN86
ATHR140
AASN143
ACL511
AHOH2363
AHOH2364
AHOH2365

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE PO4 A 505
ChainResidue
AVAL208
AVAL208
AVAL208
AMET217
AMET217
AMET217
ATRP219
ATRP219
ATRP219

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE PO4 A 506
ChainResidue
ASER7
AHOH2366

site_idAC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PO4 A 507
ChainResidue
AHIS28
APHE46
AARG81
AMPD502
AHOH2367
AHOH2368
AHOH2369
AHOH2370

site_idAC7
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 509
ChainResidue
AGLY239
AHOH2052

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 510
ChainResidue
AASP58
ALYS59
AHOH2039
AHOH2097

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 511
ChainResidue
AHIS84
AASP85
AARG117
AMPD503
AHOH2365

Functional Information from PROSITE/UniProt
site_idPS01285
Number of Residues30
DetailsFA58C_1 Coagulation factors 5/8 type C domain (FA58C) signature 1. SWsssvldknq......FIvAGsdsvkhFvaIsTQG
ChainResidueDetails
ASER51-GLY80

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AASN39
ASER40
AASP47
AASP209
AARG218
ATRP238

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphohistidine => ECO:0000305|PubMed:18384150
ChainResidueDetails
AHIS84

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PDB entries from 2024-09-11

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