Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2VI5

LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO N-6-(ribitylamino)pyrimidine-2,4(1H,3H)-dione-5-yl-propionamide

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0009231	biological_process	riboflavin biosynthetic process
A	0009349	cellular_component	riboflavin synthase complex
A	0016740	molecular_function	transferase activity
B	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0009231	biological_process	riboflavin biosynthetic process
B	0009349	cellular_component	riboflavin synthase complex
B	0016740	molecular_function	transferase activity
C	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0009231	biological_process	riboflavin biosynthetic process
C	0009349	cellular_component	riboflavin synthase complex
C	0016740	molecular_function	transferase activity
D	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0009231	biological_process	riboflavin biosynthetic process
D	0009349	cellular_component	riboflavin synthase complex
D	0016740	molecular_function	transferase activity
E	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0009231	biological_process	riboflavin biosynthetic process
E	0009349	cellular_component	riboflavin synthase complex
E	0016740	molecular_function	transferase activity
F	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0009231	biological_process	riboflavin biosynthetic process
F	0009349	cellular_component	riboflavin synthase complex
F	0016740	molecular_function	transferase activity
G	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0009231	biological_process	riboflavin biosynthetic process
G	0009349	cellular_component	riboflavin synthase complex
G	0016740	molecular_function	transferase activity
H	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0009231	biological_process	riboflavin biosynthetic process
H	0009349	cellular_component	riboflavin synthase complex
H	0016740	molecular_function	transferase activity
I	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
I	0005737	cellular_component	cytoplasm
I	0005829	cellular_component	cytosol
I	0009231	biological_process	riboflavin biosynthetic process
I	0009349	cellular_component	riboflavin synthase complex
I	0016740	molecular_function	transferase activity
J	0000906	molecular_function	6,7-dimethyl-8-ribityllumazine synthase activity
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0009231	biological_process	riboflavin biosynthetic process
J	0009349	cellular_component	riboflavin synthase complex
J	0016740	molecular_function	transferase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	16
Details	BINDING SITE FOR RESIDUE Y19 A 201

Chain	Residue
A	TRP27
A	HIS89
A	PO4702
A	HOH2007
A	HOH2049
A	HOH2087
B	ALA113
B	ASN114
A	HIS28
A	GLY58
A	ALA59
A	ILE60
A	GLU61
A	VAL81
A	VAL82
A	ILE83

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE K A 601

Chain	Residue
A	ALA70
A	HIS73
A	THR110
A	HOH2036
A	HOH2064

site_id	AC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K A 603

Chain	Residue
A	GLU155
A	LEU156
A	ARG157
A	HOH2085
J	LEU156
J	ARG157

site_id	AC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE PO4 A 702

Chain	Residue
A	GLY85
A	GLN86
A	THR87
A	Y19201
A	HOH2048
A	HOH2087
B	ARG128

site_id	AC5
Number of Residues	16
Details	BINDING SITE FOR RESIDUE Y19 B 201

Chain	Residue
B	TRP27
B	GLY58
B	ALA59
B	ILE60
B	GLU61
B	VAL81
B	VAL82
B	ILE83
B	HIS89
B	PO4702
B	HOH2080
B	HOH2081
B	HOH2082
B	HOH2083
C	ALA113
C	ASN114

site_id	AC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE K B 601

Chain	Residue
B	ALA70
B	HIS73
B	THR110
B	HOH2022
B	HOH2058

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE K B 603

Chain	Residue
B	GLU155
B	LEU156
B	ARG157
B	HOH2079
I	GLU155
I	LEU156
I	ARG157

site_id	AC8
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PO4 B 702

Chain	Residue
B	GLY85
B	GLN86
B	THR87
B	HIS89
B	Y19201
B	HOH2081
B	HOH2084
B	HOH2085
C	ARG128

site_id	AC9
Number of Residues	15
Details	BINDING SITE FOR RESIDUE Y19 C 201

Chain	Residue
C	TRP27
C	GLY58
C	ALA59
C	ILE60
C	GLU61
C	VAL81
C	VAL82
C	ILE83
C	HIS89
C	PO4702
C	HOH2057
C	HOH2058
D	ALA113
D	ASN114
D	LYS138

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE K C 601

Chain	Residue
C	ALA70
C	HIS73
C	THR110
C	HOH2027

site_id	BC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE K C 603

Chain	Residue
C	GLU155
C	LEU156
C	ARG157
H	LEU156
H	ARG157

site_id	BC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE PO4 C 702

Chain	Residue
C	HOH2058
C	HOH2059
D	ARG128
C	GLY85
C	GLN86
C	THR87
C	Y19201

site_id	BC4
Number of Residues	16
Details	BINDING SITE FOR RESIDUE Y19 D 201

Chain	Residue
D	TRP27
D	GLY58
D	ALA59
D	ILE60
D	GLU61
D	VAL81
D	VAL82
D	ILE83
D	HIS89
D	PO4702
D	HOH2066
D	HOH2067
D	HOH2068
D	HOH2069
E	ALA113
E	ASN114

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE K D 601

Chain	Residue
D	ALA70
D	HIS73
D	THR110
D	HOH2051

site_id	BC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K D 603

Chain	Residue
D	GLU155
D	LEU156
D	ARG157
G	LEU156
G	ARG157
G	HOH2050

site_id	BC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE PO4 D 702

Chain	Residue
D	GLY85
D	GLN86
D	THR87
D	Y19201
D	HOH2066
D	HOH2070
E	ARG128

site_id	BC8
Number of Residues	17
Details	BINDING SITE FOR RESIDUE Y19 E 201

Chain	Residue
A	ALA113
A	ASN114
A	HOH2079
E	TRP27
E	GLY58
E	ALA59
E	ILE60
E	GLU61
E	VAL81
E	VAL82
E	ILE83
E	HIS89
E	PO4702
E	HOH2009
E	HOH2082
E	HOH2083
E	HOH2084

site_id	BC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE K E 601

Chain	Residue
E	ALA70
E	HIS73
E	THR110
E	HOH2065

site_id	CC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K E 603

Chain	Residue
E	GLU155
E	LEU156
E	ARG157
F	GLU155
F	ARG157
F	HOH2071

site_id	CC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE PO4 E 702

Chain	Residue
A	ARG128
E	GLY85
E	GLN86
E	THR87
E	Y19201
E	HOH2052
E	HOH2082
E	HOH2084

site_id	CC3
Number of Residues	16
Details	BINDING SITE FOR RESIDUE Y19 F 201

Chain	Residue
F	TRP27
F	GLY58
F	ALA59
F	ILE60
F	GLU61
F	VAL81
F	VAL82
F	ILE83
F	HIS89
F	PO4702
F	HOH2073
F	HOH2074
F	HOH2075
F	HOH2076
G	ALA113
G	ASN114

site_id	CC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE K F 601

Chain	Residue
F	ALA70
F	HIS73
F	THR110
F	HOH2029

site_id	CC5
Number of Residues	8
Details	BINDING SITE FOR RESIDUE PO4 F 702

Chain	Residue
F	GLY85
F	GLN86
F	THR87
F	HIS89
F	Y19201
F	HOH2035
G	ARG128
G	LYS138

site_id	CC6
Number of Residues	14
Details	BINDING SITE FOR RESIDUE Y19 G 201

Chain	Residue
G	TRP27
G	GLY58
G	ALA59
G	ILE60
G	GLU61
G	VAL81
G	VAL82
G	ILE83
G	HIS89
G	PO4702
G	HOH2051
G	HOH2052
H	ALA113
H	ASN114

site_id	CC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE K G 601

Chain	Residue
G	ALA70
G	HIS73
G	THR110
G	HOH2020
G	HOH2021
G	HOH2022

site_id	CC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE PO4 G 702

Chain	Residue
G	GLY85
G	GLN86
G	THR87
G	Y19201
G	HOH2051
G	HOH2053
H	ARG128

site_id	CC9
Number of Residues	17
Details	BINDING SITE FOR RESIDUE Y19 H 201

Chain	Residue
H	TRP27
H	GLY58
H	ALA59
H	ILE60
H	GLU61
H	VAL81
H	VAL82
H	ILE83
H	HIS89
H	PO4702
H	HOH2077
H	HOH2078
H	HOH2079
H	HOH2080
I	ALA113
I	ASN114
I	HOH2062

site_id	DC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE K H 601

Chain	Residue
H	ALA70
H	HIS73
H	THR110

site_id	DC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE PO4 H 702

Chain	Residue
H	GLY85
H	GLN86
H	THR87
H	Y19201
H	HOH2078
H	HOH2080
I	ARG128
I	HOH2062

site_id	DC3
Number of Residues	18
Details	BINDING SITE FOR RESIDUE Y19 I 201

Chain	Residue
I	TRP27
I	GLY58
I	ALA59
I	ILE60
I	GLU61
I	VAL81
I	VAL82
I	ILE83
I	HIS89
I	PO4702
I	HOH2071
I	HOH2072
I	HOH2073
I	HOH2074
I	HOH2075
J	ALA113
J	ASN114
J	LYS138

site_id	DC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE K I 601

Chain	Residue
I	ALA70
I	HIS73
I	THR110
I	HOH2030
I	HOH2048

site_id	DC5
Number of Residues	9
Details	BINDING SITE FOR RESIDUE PO4 I 702

Chain	Residue
I	GLY85
I	GLN86
I	THR87
I	Y19201
I	HOH2074
I	HOH2075
I	HOH2076
I	HOH2077
J	ARG128

site_id	DC6
Number of Residues	15
Details	BINDING SITE FOR RESIDUE Y19 J 201

Chain	Residue
F	ALA113
F	ASN114
F	LYS138
J	TRP27
J	GLY58
J	ALA59
J	ILE60
J	GLU61
J	VAL81
J	VAL82
J	ILE83
J	HIS89
J	PO4702
J	HOH2008
J	HOH2098

site_id	DC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE K J 601

Chain	Residue
J	ALA70
J	HIS73
J	THR110
J	HOH2050
J	HOH2075

site_id	DC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE PO4 J 702

Chain	Residue
F	ARG128
J	GLY85
J	GLN86
J	THR87
J	Y19201
J	HOH2098
J	HOH2099

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	10
Details	Active site: {"description":"Proton donor","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	60
Details	Binding site: {}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	20
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

Catalytic Information from CSA

site_id	CSA1
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
A	HIS89

site_id	CSA10
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
J	HIS89

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
B	HIS89

site_id	CSA3
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
C	HIS89

site_id	CSA4
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
D	HIS89

site_id	CSA5
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
E	HIS89

site_id	CSA6
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
F	HIS89

site_id	CSA7
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
G	HIS89

site_id	CSA8
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
H	HIS89

site_id	CSA9
Number of Residues	1
Details	Annotated By Reference To The Literature 1rvv

Chain	Residue	Details
I	HIS89

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)