2VI5
LUMAZINE SYNTHASE FROM MYCOBACTERIUM TUBERCULOSIS BOUND TO N-6-(ribitylamino)pyrimidine-2,4(1H,3H)-dione-5-yl-propionamide
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
A | 0005829 | cellular_component | cytosol |
A | 0009231 | biological_process | riboflavin biosynthetic process |
A | 0009349 | cellular_component | riboflavin synthase complex |
A | 0016740 | molecular_function | transferase activity |
B | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
B | 0005829 | cellular_component | cytosol |
B | 0009231 | biological_process | riboflavin biosynthetic process |
B | 0009349 | cellular_component | riboflavin synthase complex |
B | 0016740 | molecular_function | transferase activity |
C | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
C | 0005829 | cellular_component | cytosol |
C | 0009231 | biological_process | riboflavin biosynthetic process |
C | 0009349 | cellular_component | riboflavin synthase complex |
C | 0016740 | molecular_function | transferase activity |
D | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
D | 0005829 | cellular_component | cytosol |
D | 0009231 | biological_process | riboflavin biosynthetic process |
D | 0009349 | cellular_component | riboflavin synthase complex |
D | 0016740 | molecular_function | transferase activity |
E | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
E | 0005829 | cellular_component | cytosol |
E | 0009231 | biological_process | riboflavin biosynthetic process |
E | 0009349 | cellular_component | riboflavin synthase complex |
E | 0016740 | molecular_function | transferase activity |
F | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
F | 0005829 | cellular_component | cytosol |
F | 0009231 | biological_process | riboflavin biosynthetic process |
F | 0009349 | cellular_component | riboflavin synthase complex |
F | 0016740 | molecular_function | transferase activity |
G | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
G | 0005829 | cellular_component | cytosol |
G | 0009231 | biological_process | riboflavin biosynthetic process |
G | 0009349 | cellular_component | riboflavin synthase complex |
G | 0016740 | molecular_function | transferase activity |
H | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
H | 0005829 | cellular_component | cytosol |
H | 0009231 | biological_process | riboflavin biosynthetic process |
H | 0009349 | cellular_component | riboflavin synthase complex |
H | 0016740 | molecular_function | transferase activity |
I | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
I | 0005829 | cellular_component | cytosol |
I | 0009231 | biological_process | riboflavin biosynthetic process |
I | 0009349 | cellular_component | riboflavin synthase complex |
I | 0016740 | molecular_function | transferase activity |
J | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
J | 0005829 | cellular_component | cytosol |
J | 0009231 | biological_process | riboflavin biosynthetic process |
J | 0009349 | cellular_component | riboflavin synthase complex |
J | 0016740 | molecular_function | transferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE Y19 A 201 |
Chain | Residue |
A | TRP27 |
A | HIS89 |
A | PO4702 |
A | HOH2007 |
A | HOH2049 |
A | HOH2087 |
B | ALA113 |
B | ASN114 |
A | HIS28 |
A | GLY58 |
A | ALA59 |
A | ILE60 |
A | GLU61 |
A | VAL81 |
A | VAL82 |
A | ILE83 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE K A 601 |
Chain | Residue |
A | ALA70 |
A | HIS73 |
A | THR110 |
A | HOH2036 |
A | HOH2064 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K A 603 |
Chain | Residue |
A | GLU155 |
A | LEU156 |
A | ARG157 |
A | HOH2085 |
J | LEU156 |
J | ARG157 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 A 702 |
Chain | Residue |
A | GLY85 |
A | GLN86 |
A | THR87 |
A | Y19201 |
A | HOH2048 |
A | HOH2087 |
B | ARG128 |
site_id | AC5 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE Y19 B 201 |
Chain | Residue |
B | TRP27 |
B | GLY58 |
B | ALA59 |
B | ILE60 |
B | GLU61 |
B | VAL81 |
B | VAL82 |
B | ILE83 |
B | HIS89 |
B | PO4702 |
B | HOH2080 |
B | HOH2081 |
B | HOH2082 |
B | HOH2083 |
C | ALA113 |
C | ASN114 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE K B 601 |
Chain | Residue |
B | ALA70 |
B | HIS73 |
B | THR110 |
B | HOH2022 |
B | HOH2058 |
site_id | AC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K B 603 |
Chain | Residue |
B | GLU155 |
B | LEU156 |
B | ARG157 |
B | HOH2079 |
I | GLU155 |
I | LEU156 |
I | ARG157 |
site_id | AC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 B 702 |
Chain | Residue |
B | GLY85 |
B | GLN86 |
B | THR87 |
B | HIS89 |
B | Y19201 |
B | HOH2081 |
B | HOH2084 |
B | HOH2085 |
C | ARG128 |
site_id | AC9 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE Y19 C 201 |
Chain | Residue |
C | TRP27 |
C | GLY58 |
C | ALA59 |
C | ILE60 |
C | GLU61 |
C | VAL81 |
C | VAL82 |
C | ILE83 |
C | HIS89 |
C | PO4702 |
C | HOH2057 |
C | HOH2058 |
D | ALA113 |
D | ASN114 |
D | LYS138 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K C 601 |
Chain | Residue |
C | ALA70 |
C | HIS73 |
C | THR110 |
C | HOH2027 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE K C 603 |
Chain | Residue |
C | GLU155 |
C | LEU156 |
C | ARG157 |
H | LEU156 |
H | ARG157 |
site_id | BC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 C 702 |
Chain | Residue |
C | HOH2058 |
C | HOH2059 |
D | ARG128 |
C | GLY85 |
C | GLN86 |
C | THR87 |
C | Y19201 |
site_id | BC4 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE Y19 D 201 |
Chain | Residue |
D | TRP27 |
D | GLY58 |
D | ALA59 |
D | ILE60 |
D | GLU61 |
D | VAL81 |
D | VAL82 |
D | ILE83 |
D | HIS89 |
D | PO4702 |
D | HOH2066 |
D | HOH2067 |
D | HOH2068 |
D | HOH2069 |
E | ALA113 |
E | ASN114 |
site_id | BC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K D 601 |
Chain | Residue |
D | ALA70 |
D | HIS73 |
D | THR110 |
D | HOH2051 |
site_id | BC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K D 603 |
Chain | Residue |
D | GLU155 |
D | LEU156 |
D | ARG157 |
G | LEU156 |
G | ARG157 |
G | HOH2050 |
site_id | BC7 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 D 702 |
Chain | Residue |
D | GLY85 |
D | GLN86 |
D | THR87 |
D | Y19201 |
D | HOH2066 |
D | HOH2070 |
E | ARG128 |
site_id | BC8 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE Y19 E 201 |
Chain | Residue |
A | ALA113 |
A | ASN114 |
A | HOH2079 |
E | TRP27 |
E | GLY58 |
E | ALA59 |
E | ILE60 |
E | GLU61 |
E | VAL81 |
E | VAL82 |
E | ILE83 |
E | HIS89 |
E | PO4702 |
E | HOH2009 |
E | HOH2082 |
E | HOH2083 |
E | HOH2084 |
site_id | BC9 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K E 601 |
Chain | Residue |
E | ALA70 |
E | HIS73 |
E | THR110 |
E | HOH2065 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K E 603 |
Chain | Residue |
E | GLU155 |
E | LEU156 |
E | ARG157 |
F | GLU155 |
F | ARG157 |
F | HOH2071 |
site_id | CC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PO4 E 702 |
Chain | Residue |
A | ARG128 |
E | GLY85 |
E | GLN86 |
E | THR87 |
E | Y19201 |
E | HOH2052 |
E | HOH2082 |
E | HOH2084 |
site_id | CC3 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE Y19 F 201 |
Chain | Residue |
F | TRP27 |
F | GLY58 |
F | ALA59 |
F | ILE60 |
F | GLU61 |
F | VAL81 |
F | VAL82 |
F | ILE83 |
F | HIS89 |
F | PO4702 |
F | HOH2073 |
F | HOH2074 |
F | HOH2075 |
F | HOH2076 |
G | ALA113 |
G | ASN114 |
site_id | CC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K F 601 |
Chain | Residue |
F | ALA70 |
F | HIS73 |
F | THR110 |
F | HOH2029 |
site_id | CC5 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PO4 F 702 |
Chain | Residue |
F | GLY85 |
F | GLN86 |
F | THR87 |
F | HIS89 |
F | Y19201 |
F | HOH2035 |
G | ARG128 |
G | LYS138 |
site_id | CC6 |
Number of Residues | 14 |
Details | BINDING SITE FOR RESIDUE Y19 G 201 |
Chain | Residue |
G | TRP27 |
G | GLY58 |
G | ALA59 |
G | ILE60 |
G | GLU61 |
G | VAL81 |
G | VAL82 |
G | ILE83 |
G | HIS89 |
G | PO4702 |
G | HOH2051 |
G | HOH2052 |
H | ALA113 |
H | ASN114 |
site_id | CC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE K G 601 |
Chain | Residue |
G | ALA70 |
G | HIS73 |
G | THR110 |
G | HOH2020 |
G | HOH2021 |
G | HOH2022 |
site_id | CC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 G 702 |
Chain | Residue |
G | GLY85 |
G | GLN86 |
G | THR87 |
G | Y19201 |
G | HOH2051 |
G | HOH2053 |
H | ARG128 |
site_id | CC9 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE Y19 H 201 |
Chain | Residue |
H | TRP27 |
H | GLY58 |
H | ALA59 |
H | ILE60 |
H | GLU61 |
H | VAL81 |
H | VAL82 |
H | ILE83 |
H | HIS89 |
H | PO4702 |
H | HOH2077 |
H | HOH2078 |
H | HOH2079 |
H | HOH2080 |
I | ALA113 |
I | ASN114 |
I | HOH2062 |
site_id | DC1 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE K H 601 |
Chain | Residue |
H | ALA70 |
H | HIS73 |
H | THR110 |
site_id | DC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE PO4 H 702 |
Chain | Residue |
H | GLY85 |
H | GLN86 |
H | THR87 |
H | Y19201 |
H | HOH2078 |
H | HOH2080 |
I | ARG128 |
I | HOH2062 |
site_id | DC3 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE Y19 I 201 |
Chain | Residue |
I | TRP27 |
I | GLY58 |
I | ALA59 |
I | ILE60 |
I | GLU61 |
I | VAL81 |
I | VAL82 |
I | ILE83 |
I | HIS89 |
I | PO4702 |
I | HOH2071 |
I | HOH2072 |
I | HOH2073 |
I | HOH2074 |
I | HOH2075 |
J | ALA113 |
J | ASN114 |
J | LYS138 |
site_id | DC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE K I 601 |
Chain | Residue |
I | ALA70 |
I | HIS73 |
I | THR110 |
I | HOH2030 |
I | HOH2048 |
site_id | DC5 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE PO4 I 702 |
Chain | Residue |
I | GLY85 |
I | GLN86 |
I | THR87 |
I | Y19201 |
I | HOH2074 |
I | HOH2075 |
I | HOH2076 |
I | HOH2077 |
J | ARG128 |
site_id | DC6 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE Y19 J 201 |
Chain | Residue |
F | ALA113 |
F | ASN114 |
F | LYS138 |
J | TRP27 |
J | GLY58 |
J | ALA59 |
J | ILE60 |
J | GLU61 |
J | VAL81 |
J | VAL82 |
J | ILE83 |
J | HIS89 |
J | PO4702 |
J | HOH2008 |
J | HOH2098 |
site_id | DC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE K J 601 |
Chain | Residue |
J | ALA70 |
J | HIS73 |
J | THR110 |
J | HOH2050 |
J | HOH2075 |
site_id | DC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 J 702 |
Chain | Residue |
F | ARG128 |
J | GLY85 |
J | GLN86 |
J | THR87 |
J | Y19201 |
J | HOH2098 |
J | HOH2099 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 10 |
Details | ACT_SITE: Proton donor => ECO:0000255 |
Chain | Residue | Details |
A | HIS89 | |
J | HIS89 | |
B | HIS89 | |
C | HIS89 | |
D | HIS89 | |
E | HIS89 | |
F | HIS89 | |
G | HIS89 | |
H | HIS89 | |
I | HIS89 |
site_id | SWS_FT_FI2 |
Number of Residues | 40 |
Details | BINDING: |
Chain | Residue | Details |
A | TRP27 | |
C | ALA59 | |
C | VAL81 | |
C | ASN114 | |
D | TRP27 | |
D | ALA59 | |
D | VAL81 | |
D | ASN114 | |
E | TRP27 | |
E | ALA59 | |
E | VAL81 | |
A | ALA59 | |
E | ASN114 | |
F | TRP27 | |
F | ALA59 | |
F | VAL81 | |
F | ASN114 | |
G | TRP27 | |
G | ALA59 | |
G | VAL81 | |
G | ASN114 | |
H | TRP27 | |
A | VAL81 | |
H | ALA59 | |
H | VAL81 | |
H | ASN114 | |
I | TRP27 | |
I | ALA59 | |
I | VAL81 | |
I | ASN114 | |
J | TRP27 | |
J | ALA59 | |
J | VAL81 | |
A | ASN114 | |
J | ASN114 | |
B | TRP27 | |
B | ALA59 | |
B | VAL81 | |
B | ASN114 | |
C | TRP27 |
site_id | SWS_FT_FI3 |
Number of Residues | 20 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | GLN86 | |
E | ARG128 | |
F | GLN86 | |
F | ARG128 | |
G | GLN86 | |
G | ARG128 | |
H | GLN86 | |
H | ARG128 | |
I | GLN86 | |
I | ARG128 | |
J | GLN86 | |
A | ARG128 | |
J | ARG128 | |
B | GLN86 | |
B | ARG128 | |
C | GLN86 | |
C | ARG128 | |
D | GLN86 | |
D | ARG128 | |
E | GLN86 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
A | HIS89 |
site_id | CSA10 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
J | HIS89 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
B | HIS89 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
C | HIS89 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
D | HIS89 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
E | HIS89 |
site_id | CSA6 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
F | HIS89 |
site_id | CSA7 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
G | HIS89 |
site_id | CSA8 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
H | HIS89 |
site_id | CSA9 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
I | HIS89 |