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2VEI

Structure-based enzyme engineering efforts with an inactive monomeric TIM variant: the importance of a single point mutation for generating an active site with suitable binding properties

Functional Information from GO Data
ChainGOidnamespacecontents
A0004807molecular_functiontriose-phosphate isomerase activity
A0005737cellular_componentcytoplasm
A0005777cellular_componentperoxisome
A0005829cellular_componentcytosol
A0006094biological_processgluconeogenesis
A0006096biological_processglycolytic process
A0016853molecular_functionisomerase activity
A0019563biological_processglycerol catabolic process
A0020015cellular_componentglycosome
A0046166biological_processglyceraldehyde-3-phosphate biosynthetic process
B0004807molecular_functiontriose-phosphate isomerase activity
B0005737cellular_componentcytoplasm
B0005777cellular_componentperoxisome
B0005829cellular_componentcytosol
B0006094biological_processgluconeogenesis
B0006096biological_processglycolytic process
B0016853molecular_functionisomerase activity
B0019563biological_processglycerol catabolic process
B0020015cellular_componentglycosome
B0046166biological_processglyceraldehyde-3-phosphate biosynthetic process
C0004807molecular_functiontriose-phosphate isomerase activity
C0005737cellular_componentcytoplasm
C0005777cellular_componentperoxisome
C0005829cellular_componentcytosol
C0006094biological_processgluconeogenesis
C0006096biological_processglycolytic process
C0016853molecular_functionisomerase activity
C0019563biological_processglycerol catabolic process
C0020015cellular_componentglycosome
C0046166biological_processglyceraldehyde-3-phosphate biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 A1251
ChainResidue
ASER15
CGLY16
CHOH2064
AGLY16
AHOH2283
AHOH2284
AHOH2285
AHOH2286
BSER15
BGLY16
CSER15

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 C1251
ChainResidue
CLYS52
CVAL61
CILE62
CASN89
CHOH2077
CHOH2079
CHOH2238
CHOH2239

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 A1252
ChainResidue
AGLY16
ASER17
AHOH2287
AHOH2288
AHOH2289
BGLY16
BSER17
BHOH2018
CGLY16
CSER17

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A1253
ChainResidue
AARG134
AGLN182
AHOH2220
AHOH2290
AHOH2291

site_idAC5
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 A1256
ChainResidue
AHOH2300

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B1251
ChainResidue
BTHR105
BASN106
BGLU107
BHOH2121
BHOH2228

site_idAC7
Number of Residues1
DetailsBINDING SITE FOR RESIDUE SO4 C1252
ChainResidue
CLYS161

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C1253
ChainResidue
CTHR105
CASN106
CGLU107
CHOH2120
CHOH2240

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C1254
ChainResidue
CSER2
CLYS3
CHOH2241
CHOH2242

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 C1255
ChainResidue
CARG134
CGLN182

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B1252
ChainResidue
BSER2
BLYS3
BHOH2230

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B1253
ChainResidue
BARG134
BGLN182

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A1254
ChainResidue
ALYS155
ALYS156
AHOH2292

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B1254
ChainResidue
BLYS13
BSER213
BGLY234
BLYS239
BHOH2231

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B1255
ChainResidue
BTHR44
BPHE45
BGLN65
BASN66
BHOH2232
BHOH2233
BHOH2234

site_idBC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A1255
ChainResidue
AASN34
ALYS59
AHOH2294
AHOH2295

Functional Information from PROSITE/UniProt
site_idPS00171
Number of Residues11
DetailsTIM_1 Triosephosphate isomerase active site. AYEPVWAIGTG
ChainResidueDetails
AALA165-GLY175

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Electrophile
ChainResidueDetails
AHIS95
BHIS95
CHIS95

site_idSWS_FT_FI2
Number of Residues3
DetailsACT_SITE: Proton acceptor
ChainResidueDetails
AGLU167
BGLU167
CGLU167

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING:
ChainResidueDetails
AASN11
ALYS13
BASN11
BLYS13
CASN11
CLYS13

218853

PDB entries from 2024-04-24

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