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2VDV

Structure of trm8, m7G methylation enzyme

Functional Information from GO Data
ChainGOidnamespacecontents
E0006400biological_processtRNA modification
E0008176molecular_functiontRNA (guanine(46)-N7)-methyltransferase activity
F0006400biological_processtRNA modification
F0008176molecular_functiontRNA (guanine(46)-N7)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE SAM E1287
ChainResidue
EGLY103
ECYS181
EPHE182
EASP184
ETHR259
EGLU261
EHOH2086
EHOH2087
ECYS104
EGLY105
EGLU126
EILE127
EARG128
EGLY160
EASN161
EALA162

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE SAM F1287
ChainResidue
FGLY103
FCYS104
FGLU126
FILE127
FARG128
FGLY160
FASN161
FALA162
FCYS181
FPHE182
FASP184
FTHR259
FGLU261
FHOH2116
FHOH2117
FHOH2119

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_03055","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18184583","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {}
ChainResidueDetails

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PDB entries from 2025-10-22

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