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2VBI

Holostructure of pyruvate decarboxylase from Acetobacter pasteurianus

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0016831molecular_functioncarboxy-lyase activity
A0030976molecular_functionthiamine pyrophosphate binding
B0000287molecular_functionmagnesium ion binding
B0003824molecular_functioncatalytic activity
B0016831molecular_functioncarboxy-lyase activity
B0030976molecular_functionthiamine pyrophosphate binding
C0000287molecular_functionmagnesium ion binding
C0003824molecular_functioncatalytic activity
C0016831molecular_functioncarboxy-lyase activity
C0030976molecular_functionthiamine pyrophosphate binding
D0000287molecular_functionmagnesium ion binding
D0003824molecular_functioncatalytic activity
D0016831molecular_functioncarboxy-lyase activity
D0030976molecular_functionthiamine pyrophosphate binding
E0000287molecular_functionmagnesium ion binding
E0003824molecular_functioncatalytic activity
E0016831molecular_functioncarboxy-lyase activity
E0030976molecular_functionthiamine pyrophosphate binding
F0000287molecular_functionmagnesium ion binding
F0003824molecular_functioncatalytic activity
F0016831molecular_functioncarboxy-lyase activity
F0030976molecular_functionthiamine pyrophosphate binding
G0000287molecular_functionmagnesium ion binding
G0003824molecular_functioncatalytic activity
G0016831molecular_functioncarboxy-lyase activity
G0030976molecular_functionthiamine pyrophosphate binding
H0000287molecular_functionmagnesium ion binding
H0003824molecular_functioncatalytic activity
H0016831molecular_functioncarboxy-lyase activity
H0030976molecular_functionthiamine pyrophosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A1000
ChainResidue
AASP436
AASN463
AGLY465
ATPP2000
AHOH2006

site_idAC2
Number of Residues19
DetailsBINDING SITE FOR RESIDUE TPP A2000
ChainResidue
AGLY435
AASP436
AGLY437
ASER438
AASN463
AGLY465
ATYR466
AVAL467
AILE468
AMG1000
AHOH2006
BALA25
BGLY26
BGLU50
BVAL75
AASP386
AGLY409
AHIS410
AILE411

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG B1000
ChainResidue
BASP436
BASN463
BGLY465
BTPP2000
BHOH2005

site_idAC4
Number of Residues21
DetailsBINDING SITE FOR RESIDUE TPP B2000
ChainResidue
AALA25
AGLY26
AGLU50
AVAL75
AHIS114
BGLY385
BASP386
BGLY409
BHIS410
BILE411
BGLY435
BASP436
BGLY437
BSER438
BASN463
BGLY465
BTYR466
BVAL467
BILE468
BMG1000
BHOH2005

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG C1000
ChainResidue
CASP436
CASN463
CGLY465
CTPP2000
CHOH2013

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE TPP C2000
ChainResidue
CASP386
CGLY409
CHIS410
CILE411
CGLY435
CASP436
CGLY437
CSER438
CASN463
CGLY465
CTYR466
CVAL467
CILE468
CMG1000
CHOH2013
CHOH2014
DALA25
DGLY26
DGLU50
DVAL75
DHIS114

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG D1000
ChainResidue
DASP436
DASN463
DGLY465
DTPP2000
DHOH2015

site_idAC8
Number of Residues22
DetailsBINDING SITE FOR RESIDUE TPP D2000
ChainResidue
DILE468
DMG1000
DHOH2010
DHOH2015
CALA25
CGLY26
CGLU50
CVAL75
CHIS114
DGLY385
DASP386
DGLY409
DHIS410
DILE411
DGLY435
DASP436
DGLY437
DSER438
DASN463
DGLY465
DTYR466
DVAL467

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG E1000
ChainResidue
EASP436
EASN463
EGLY465
ETPP2000
EHOH2020

site_idBC1
Number of Residues20
DetailsBINDING SITE FOR RESIDUE TPP E2000
ChainResidue
EASP386
EGLY409
EHIS410
EILE411
EGLY435
EASP436
EGLY437
ESER438
EASN463
EGLY465
ETYR466
EVAL467
EILE468
EMG1000
EHOH2020
FALA25
FGLY26
FGLU50
FVAL75
FHIS114

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG F1000
ChainResidue
FASP436
FASN463
FGLY465
FTPP2000
FHOH2007

site_idBC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE TPP F2000
ChainResidue
EALA25
EGLY26
EGLU50
EVAL75
EHIS114
FGLY385
FASP386
FGLY409
FHIS410
FILE411
FGLY435
FASP436
FGLY437
FSER438
FASN463
FGLY465
FTYR466
FVAL467
FILE468
FMG1000
FHOH2007

site_idBC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG G1000
ChainResidue
GASP436
GASN463
GGLY465
GTPP2000
GHOH2011

site_idBC5
Number of Residues23
DetailsBINDING SITE FOR RESIDUE TPP G2000
ChainResidue
GTHR384
GGLY385
GASP386
GGLY409
GHIS410
GILE411
GGLY435
GASP436
GGLY437
GSER438
GASN463
GGLY465
GTYR466
GVAL467
GILE468
GGLU469
GMG1000
GHOH2011
HALA25
HGLY26
HGLU50
HVAL75
HHIS114

site_idBC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG H1000
ChainResidue
HASP436
HASN463
HGLY465
HTPP2000
HHOH2013

site_idBC7
Number of Residues21
DetailsBINDING SITE FOR RESIDUE TPP H2000
ChainResidue
GALA25
GGLY26
GGLU50
GVAL75
GHIS114
HGLY385
HASP386
HGLY409
HHIS410
HILE411
HGLY435
HASP436
HGLY437
HSER438
HASN463
HGLY465
HTYR466
HVAL467
HILE468
HMG1000
HHOH2013

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
AGLU469
AHIS113
AHIS114
AASP27

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
BGLU469
BHIS113
BHIS114
BASP27

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
CGLU469
CHIS113
CHIS114
CASP27

site_idCSA4
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
DGLU469
DHIS113
DHIS114
DASP27

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
EGLU469
EHIS113
EHIS114
EASP27

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
FGLU469
FHIS113
FHIS114
FASP27

site_idCSA7
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
GGLU469
GHIS113
GHIS114
GASP27

site_idCSA8
Number of Residues4
DetailsAnnotated By Reference To The Literature 1pvd
ChainResidueDetails
HGLU469
HHIS113
HHIS114
HASP27

223790

PDB entries from 2024-08-14

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