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2VA2

Complex structure of Sulfolobus solfataricus DPO4 and DNA duplex containing a hydrophobic thymine isostere 2,4-difluorotoluene nucleotide in the template strand

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 1343
ChainResidue
AASP7
APHE8
AASP105
ADCT1345
AHOH2089

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 1344
ChainResidue
AHOH2050
CHOH2014
AALA181
AILE186
AHOH2023
AHOH2048

site_idAC3
Number of Residues21
DetailsBINDING SITE FOR RESIDUE DCT A 1345
ChainResidue
AASP7
ATYR10
AALA44
ATHR45
ATYR48
AARG51
AALA57
AGLY58
AASP105
ALYS159
ACA1343
ACA1346
AHOH2002
AHOH2003
AHOH2006
AHOH2014
AHOH2088
AHOH2089
AHOH2090
CDA13
DDG5

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA A 1346
ChainResidue
ADCT1345
AHOH2002
CHOH2017

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CA B 3002
ChainResidue
BHOH2049
EDCT1014
EHOH2010

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 1343
ChainResidue
BASP7
BPHE8
BASP105
BHOH2037
EDCT1014

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA B 1344
ChainResidue
BALA181
BILE186
BHOH2053
BHOH2054
BHOH2055

site_idAC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE DCT E 1014
ChainResidue
BASP7
BPHE8
BTYR10
BTHR45
BTYR48
BARG51
BASP105
BLYS159
BCA1343
BCA3002
EDA13
EHOH2009
EHOH2010
EHOH2011
FDG5

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

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PDB entries from 2024-07-24

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