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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2V8I

Structure of a Family 2 Pectate Lyase in a Native Form

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0016829	molecular_function	lyase activity
A	0016837	molecular_function	carbon-oxygen lyase activity, acting on polysaccharides
A	0042597	cellular_component	periplasmic space
A	0045490	biological_process	pectin catabolic process
A	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1547

Chain	Residue
A	HIS443
A	SER496

site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1548

Chain	Residue
A	PRO545
A	IOD1597

site_id	AC3
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1549

Chain	Residue
A	SER123
A	IOD1552

site_id	AC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1550

Chain	Residue
A	GLN544

site_id	AC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1551

Chain	Residue
A	SER430
A	HOH2599

site_id	AC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE IOD A1552

Chain	Residue
A	GLY516
A	ALA517
A	SER528
A	IOD1549
A	IOD1576
A	HOH2726

site_id	AC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1553

Chain	Residue
A	LYS368
A	ALA448

site_id	AC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1554

Chain	Residue
A	LEU543
A	HOH2290
A	HOH2315

site_id	AC9
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1555

Chain	Residue
A	LEU199
A	HOH2357

site_id	BC1
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1556

Chain	Residue
A	ARG451
A	HOH2652

site_id	BC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1557

Chain	Residue
A	ARG402
A	HOH2519

site_id	BC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1558

Chain	Residue
A	THR428
A	HOH2601
A	HOH2627

site_id	BC4
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1559

Chain	Residue
A	LYS255

site_id	BC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE IOD A1560

Chain	Residue
A	TRP183
A	HOH2041
A	HOH2133
A	HOH2333

site_id	BC6
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1561

Chain	Residue
A	ASP4
A	HOH2657

site_id	BC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1562

Chain	Residue
A	GLU184
A	HOH2131

site_id	BC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1563

Chain	Residue
A	LYS312
A	HOH2486

site_id	BC9
Number of Residues	6
Details	BINDING SITE FOR RESIDUE IOD A1564

Chain	Residue
A	ASP145
A	SER146
A	ASP147
A	GLU174
A	HOH2221
A	HOH2249

site_id	CC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE IOD A1565

Chain	Residue
A	ASP88
A	ARG91
A	IOD1573
A	IOD1591

site_id	CC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1566

Chain	Residue
A	GLN544

site_id	CC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE IOD A1567

Chain	Residue
A	ARG530
A	ASN532
A	IOD1572
A	HOH2742

site_id	CC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE IOD A1568

Chain	Residue
A	PRO316
A	GLN317
A	GLY318
A	GLN319
A	ASP320

site_id	CC5
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1569

Chain	Residue
A	ARG81
A	ARG85
A	HOH2136

site_id	CC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1570

Chain	Residue
A	ARG91
A	VAL144
A	HOH2247

site_id	CC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1571

Chain	Residue
A	LYS293
A	IOD1593
A	HOH2568

site_id	CC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE IOD A1572

Chain	Residue
A	ARG530
A	IOD1567
A	HOH2107
A	HOH2323

site_id	CC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1573

Chain	Residue
A	PRO31
A	IOD1565
A	HOH2018

site_id	DC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1574

Chain	Residue
A	HOH2640

site_id	DC2
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1575

Chain	Residue
A	IOD1578

site_id	DC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE IOD A1576

Chain	Residue
A	GLU124
A	IOD1552
A	HOH2212
A	HOH2726

site_id	DC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1578

Chain	Residue
A	IOD1575
A	HOH2085

site_id	DC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1580

Chain	Residue
A	LYS268

site_id	DC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1581

Chain	Residue
A	ARG54

site_id	DC7
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1582

Chain	Residue
A	HOH2053
A	HOH2111

site_id	DC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1584

Chain	Residue
A	GLY176
A	LYS177

site_id	DC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1585

Chain	Residue
A	ARG256

site_id	EC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1586

Chain	Residue
A	GLY315
A	PRO316
A	GLN319

site_id	EC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE IOD A1587

Chain	Residue
A	ASN356
A	HOH2537

site_id	EC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1588

Chain	Residue
A	LYS500
A	GLN502
A	HOH2713

site_id	EC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE IOD A1589

Chain	Residue
A	ARG154
A	LEU215
A	ASP221
A	HOH2092
A	HOH2215

site_id	EC5
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1590

Chain	Residue
A	PHE187

site_id	EC6
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1591

Chain	Residue
A	IOD1565

site_id	EC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1592

Chain	Residue
A	TYR210
A	HOH2242
A	HOH2494

site_id	EC8
Number of Residues	3
Details	BINDING SITE FOR RESIDUE IOD A1593

Chain	Residue
A	IOD1571
A	HOH2472
A	HOH2556

site_id	EC9
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1596

Chain	Residue
A	ILE391

site_id	FC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE IOD A1597

Chain	Residue
A	IOD1548

222415

PDB entries from 2024-07-10

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