2V3J
The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000447 | biological_process | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| A | 0000472 | biological_process | endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| A | 0000480 | biological_process | endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005730 | cellular_component | nucleolus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005880 | cellular_component | nuclear microtubule |
| A | 0006364 | biological_process | rRNA processing |
| A | 0019843 | molecular_function | rRNA binding |
| A | 0030490 | biological_process | maturation of SSU-rRNA |
| A | 0030686 | cellular_component | 90S preribosome |
| A | 0031167 | biological_process | rRNA methylation |
| A | 0032040 | cellular_component | small-subunit processome |
| A | 0034399 | cellular_component | nuclear periphery |
| A | 0042274 | biological_process | ribosomal small subunit biogenesis |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0070037 | molecular_function | rRNA (pseudouridine) methyltransferase activity |
| A | 0070475 | biological_process | rRNA base methylation |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A1252 |
| Chain | Residue |
| A | ARG129 |
| A | PRO131 |
| A | ARG132 |
| A | THR133 |
| A | ARG136 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 A1253 |
| Chain | Residue |
| A | HOH2135 |
| A | HOH2222 |
| A | HOH2223 |
| A | HOH2224 |
| A | HOH2225 |
| A | LYS135 |
| A | ARG136 |
| A | THR168 |
| A | LYS177 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"18063569","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21087996","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 4 |
| Details | Site: {"description":"Interaction with substrate rRNA","evidences":[{"source":"PubMed","id":"21087996","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Site: {"description":"Stabilizes Arg-88","evidences":[{"source":"PubMed","id":"21087996","evidenceCode":"ECO:0000303"}]} |
| Chain | Residue | Details |
