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2V3J

The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0000472biological_processendonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0000480biological_processendonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005880cellular_componentnuclear microtubule
A0006364biological_processrRNA processing
A0008168molecular_functionmethyltransferase activity
A0019843molecular_functionrRNA binding
A0030490biological_processmaturation of SSU-rRNA
A0030686cellular_component90S preribosome
A0031167biological_processrRNA methylation
A0032040cellular_componentsmall-subunit processome
A0032259biological_processmethylation
A0034399cellular_componentnuclear periphery
A0042254biological_processribosome biogenesis
A0042274biological_processribosomal small subunit biogenesis
A0042802molecular_functionidentical protein binding
A0070037molecular_functionrRNA (pseudouridine) methyltransferase activity
A0070475biological_processrRNA base methylation
A1990904cellular_componentribonucleoprotein complex
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A1252
ChainResidue
AARG129
APRO131
AARG132
ATHR133
AARG136

site_idAC2
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A1253
ChainResidue
AHOH2135
AHOH2222
AHOH2223
AHOH2224
AHOH2225
ALYS135
AARG136
ATHR168
ALYS177

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:18063569, ECO:0000269|PubMed:21087996
ChainResidueDetails
ALEU180
AGLY207
AGLY212
ALEU227

site_idSWS_FT_FI2
Number of Residues4
DetailsSITE: Interaction with substrate rRNA => ECO:0000269|PubMed:21087996
ChainResidueDetails
AARG88
AARG129
AARG132
AARG136

site_idSWS_FT_FI3
Number of Residues1
DetailsSITE: Stabilizes Arg-88 => ECO:0000303|PubMed:21087996
ChainResidueDetails
AASP90

225946

PDB entries from 2024-10-09

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