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2QYK

Crystal structure of PDE4A10 in complex with inhibitor NPV

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN A 1
ChainResidue
AHIS376
AHIS412
AASP413
AASP530
AHOH623
AHOH624

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 2
ChainResidue
AHOH626
AHOH627
AHOH628
AASP413
AHOH623
AHOH625

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ZN B 1
ChainResidue
BHIS376
BHIS412
BASP413
BASP530
BHOH623
BHOH624

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 2
ChainResidue
BASP413
BHOH623
BHOH625
BHOH626
BHOH627
BHOH628

site_idAC5
Number of Residues13
DetailsBINDING SITE FOR RESIDUE NPV A 3
ChainResidue
ATYR371
AHIS372
AASN533
AILE548
APHE552
AMET569
ASER580
AGLN581
APHE584
AHOH625
AHOH629
AHOH733
AHOH755

site_idAC6
Number of Residues12
DetailsBINDING SITE FOR RESIDUE NPV B 3
ChainResidue
BTYR371
BASN533
BPHE552
BMET569
BSER580
BGLN581
BPHE584
BHOH625
BHOH626
BHOH717
BHOH738
BHOH740

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF
ChainResidueDetails
AHIS412-PHE423

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
ALEU433
BLEU433

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
ALEU433
ALYS474
AGLN581
APHE584
BLEU433
BLYS474
BGLN581
BPHE584

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:17727341, ECO:0000269|Ref.20, ECO:0007744|PDB:2QYK, ECO:0007744|PDB:3I8V
ChainResidueDetails
AASP437
AARG473
APRO591
BASP437
BARG473
BPRO591

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ALYS346
BLYS346

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO) => ECO:0000269|PubMed:20196770
ChainResidueDetails
AMET358
BMET358

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PDB entries from 2024-07-10

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