2QKK
Human RNase H catalytic domain mutant D210N in complex with 14-mer RNA/DNA hybrid
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
B | 0003676 | molecular_function | nucleic acid binding |
B | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
E | 0003676 | molecular_function | nucleic acid binding |
E | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
F | 0003676 | molecular_function | nucleic acid binding |
F | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
I | 0003676 | molecular_function | nucleic acid binding |
I | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
J | 0003676 | molecular_function | nucleic acid binding |
J | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
M | 0003676 | molecular_function | nucleic acid binding |
M | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
N | 0003676 | molecular_function | nucleic acid binding |
N | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
R | 0003676 | molecular_function | nucleic acid binding |
R | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
S | 0003676 | molecular_function | nucleic acid binding |
S | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
W | 0003676 | molecular_function | nucleic acid binding |
W | 0004523 | molecular_function | RNA-DNA hybrid ribonuclease activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 1001 |
Chain | Residue |
A | ASP145 |
A | GLU186 |
A | ASN210 |
A | CA1002 |
C | A5 |
C | C6 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA A 1002 |
Chain | Residue |
A | HOH2003 |
A | HOH2007 |
C | C6 |
C | HOH15 |
A | ASP145 |
A | ASP274 |
A | CA1001 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 1009 |
Chain | Residue |
B | ASP145 |
B | ASN210 |
B | ASP274 |
B | HOH2002 |
B | HOH2003 |
B | HOH2004 |
site_id | AC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B 2001 |
Chain | Residue |
B | TYR143 |
F | TYR143 |
F | PHE267 |
site_id | AC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA E 1003 |
Chain | Residue |
E | ASP145 |
E | ASP274 |
G | C6 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE CA E 1004 |
Chain | Residue |
E | ASP145 |
E | GLU186 |
E | ASN210 |
G | A5 |
G | C6 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA F 1013 |
Chain | Residue |
F | ASP145 |
F | ASN210 |
F | ASP274 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA I 1006 |
Chain | Residue |
I | ASP145 |
I | ASP274 |
K | C6 |
K | HOH26 |
site_id | AC9 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA J 1008 |
Chain | Residue |
J | ASP145 |
J | ASN210 |
J | ASP274 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA M 1010 |
Chain | Residue |
M | HOH11 |
M | HOH12 |
M | ASP145 |
M | ASP274 |
M | CA1014 |
O | C6 |
O | HOH15 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA M 1014 |
Chain | Residue |
M | ASP145 |
M | GLU186 |
M | ASN210 |
M | CA1010 |
O | A5 |
O | C6 |
site_id | BC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA N 1005 |
Chain | Residue |
N | ASP145 |
N | ASN210 |
N | ASP274 |
site_id | BC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CA R 1011 |
Chain | Residue |
R | ASP145 |
R | GLY146 |
R | ASP274 |
T | C6 |
site_id | BC5 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA S 1007 |
Chain | Residue |
S | ASP145 |
S | ASN210 |
S | ASP274 |
site_id | BC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CA W 1012 |
Chain | Residue |
W | ASP145 |
W | ASN210 |
W | ASP274 |
site_id | BC7 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE TRS D 2003 |
Chain | Residue |
A | GLY266 |
A | GLU271 |
A | ASP286 |
D | DA17 |
D | HOH2004 |
site_id | BC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MES A 2002 |
Chain | Residue |
A | THR219 |
A | ILE256 |
A | GLN257 |
A | TRP258 |
R | ASN220 |
R | GLN223 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 44 |
Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00408 |
Chain | Residue | Details |
A | ASP145 | |
E | GLU186 | |
E | ASN210 | |
E | ASP274 | |
F | ASP145 | |
F | GLU186 | |
F | ASN210 | |
F | ASP274 | |
I | ASP145 | |
I | GLU186 | |
I | ASN210 | |
A | GLU186 | |
I | ASP274 | |
J | ASP145 | |
J | GLU186 | |
J | ASN210 | |
J | ASP274 | |
M | ASP145 | |
M | GLU186 | |
M | ASN210 | |
M | ASP274 | |
N | ASP145 | |
A | ASN210 | |
N | GLU186 | |
N | ASN210 | |
N | ASP274 | |
R | ASP145 | |
R | GLU186 | |
R | ASN210 | |
R | ASP274 | |
S | ASP145 | |
S | GLU186 | |
S | ASN210 | |
A | ASP274 | |
S | ASP274 | |
W | ASP145 | |
W | GLU186 | |
W | ASN210 | |
W | ASP274 | |
B | ASP145 | |
B | GLU186 | |
B | ASN210 | |
B | ASP274 | |
E | ASP145 |