2Q3E
Structure of human UDP-glucose dehydrogenase complexed with NADH and UDP-glucose
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0001702 | biological_process | gastrulation with mouth forming second |
A | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
A | 0005634 | cellular_component | nucleus |
A | 0005654 | cellular_component | nucleoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
A | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
A | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
A | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
A | 0034214 | biological_process | protein hexamerization |
A | 0042802 | molecular_function | identical protein binding |
A | 0048666 | biological_process | neuron development |
A | 0051287 | molecular_function | NAD binding |
A | 0070062 | cellular_component | extracellular exosome |
B | 0001702 | biological_process | gastrulation with mouth forming second |
B | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
B | 0005634 | cellular_component | nucleus |
B | 0005654 | cellular_component | nucleoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
B | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
B | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
B | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
B | 0034214 | biological_process | protein hexamerization |
B | 0042802 | molecular_function | identical protein binding |
B | 0048666 | biological_process | neuron development |
B | 0051287 | molecular_function | NAD binding |
B | 0070062 | cellular_component | extracellular exosome |
C | 0001702 | biological_process | gastrulation with mouth forming second |
C | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
C | 0005634 | cellular_component | nucleus |
C | 0005654 | cellular_component | nucleoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
C | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
C | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
C | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
C | 0034214 | biological_process | protein hexamerization |
C | 0042802 | molecular_function | identical protein binding |
C | 0048666 | biological_process | neuron development |
C | 0051287 | molecular_function | NAD binding |
C | 0070062 | cellular_component | extracellular exosome |
D | 0001702 | biological_process | gastrulation with mouth forming second |
D | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
D | 0005634 | cellular_component | nucleus |
D | 0005654 | cellular_component | nucleoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
D | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
D | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
D | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
D | 0034214 | biological_process | protein hexamerization |
D | 0042802 | molecular_function | identical protein binding |
D | 0048666 | biological_process | neuron development |
D | 0051287 | molecular_function | NAD binding |
D | 0070062 | cellular_component | extracellular exosome |
E | 0001702 | biological_process | gastrulation with mouth forming second |
E | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
E | 0005634 | cellular_component | nucleus |
E | 0005654 | cellular_component | nucleoplasm |
E | 0005829 | cellular_component | cytosol |
E | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
E | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
E | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
E | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
E | 0034214 | biological_process | protein hexamerization |
E | 0042802 | molecular_function | identical protein binding |
E | 0048666 | biological_process | neuron development |
E | 0051287 | molecular_function | NAD binding |
E | 0070062 | cellular_component | extracellular exosome |
F | 0001702 | biological_process | gastrulation with mouth forming second |
F | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
F | 0005634 | cellular_component | nucleus |
F | 0005654 | cellular_component | nucleoplasm |
F | 0005829 | cellular_component | cytosol |
F | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
F | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
F | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
F | 0016491 | molecular_function | oxidoreductase activity |
F | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
F | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
F | 0034214 | biological_process | protein hexamerization |
F | 0042802 | molecular_function | identical protein binding |
F | 0048666 | biological_process | neuron development |
F | 0051287 | molecular_function | NAD binding |
F | 0070062 | cellular_component | extracellular exosome |
G | 0001702 | biological_process | gastrulation with mouth forming second |
G | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
G | 0005634 | cellular_component | nucleus |
G | 0005654 | cellular_component | nucleoplasm |
G | 0005829 | cellular_component | cytosol |
G | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
G | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
G | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
G | 0016491 | molecular_function | oxidoreductase activity |
G | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
G | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
G | 0034214 | biological_process | protein hexamerization |
G | 0042802 | molecular_function | identical protein binding |
G | 0048666 | biological_process | neuron development |
G | 0051287 | molecular_function | NAD binding |
G | 0070062 | cellular_component | extracellular exosome |
H | 0001702 | biological_process | gastrulation with mouth forming second |
H | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
H | 0005634 | cellular_component | nucleus |
H | 0005654 | cellular_component | nucleoplasm |
H | 0005829 | cellular_component | cytosol |
H | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
H | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
H | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
H | 0016491 | molecular_function | oxidoreductase activity |
H | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
H | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
H | 0034214 | biological_process | protein hexamerization |
H | 0042802 | molecular_function | identical protein binding |
H | 0048666 | biological_process | neuron development |
H | 0051287 | molecular_function | NAD binding |
H | 0070062 | cellular_component | extracellular exosome |
I | 0001702 | biological_process | gastrulation with mouth forming second |
I | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
I | 0005634 | cellular_component | nucleus |
I | 0005654 | cellular_component | nucleoplasm |
I | 0005829 | cellular_component | cytosol |
I | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
I | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
I | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
I | 0016491 | molecular_function | oxidoreductase activity |
I | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
I | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
I | 0034214 | biological_process | protein hexamerization |
I | 0042802 | molecular_function | identical protein binding |
I | 0048666 | biological_process | neuron development |
I | 0051287 | molecular_function | NAD binding |
I | 0070062 | cellular_component | extracellular exosome |
J | 0001702 | biological_process | gastrulation with mouth forming second |
J | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
J | 0005634 | cellular_component | nucleus |
J | 0005654 | cellular_component | nucleoplasm |
J | 0005829 | cellular_component | cytosol |
J | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
J | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
J | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
J | 0016491 | molecular_function | oxidoreductase activity |
J | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
J | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
J | 0034214 | biological_process | protein hexamerization |
J | 0042802 | molecular_function | identical protein binding |
J | 0048666 | biological_process | neuron development |
J | 0051287 | molecular_function | NAD binding |
J | 0070062 | cellular_component | extracellular exosome |
K | 0001702 | biological_process | gastrulation with mouth forming second |
K | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
K | 0005634 | cellular_component | nucleus |
K | 0005654 | cellular_component | nucleoplasm |
K | 0005829 | cellular_component | cytosol |
K | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
K | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
K | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
K | 0016491 | molecular_function | oxidoreductase activity |
K | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
K | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
K | 0034214 | biological_process | protein hexamerization |
K | 0042802 | molecular_function | identical protein binding |
K | 0048666 | biological_process | neuron development |
K | 0051287 | molecular_function | NAD binding |
K | 0070062 | cellular_component | extracellular exosome |
L | 0001702 | biological_process | gastrulation with mouth forming second |
L | 0003979 | molecular_function | UDP-glucose 6-dehydrogenase activity |
L | 0005634 | cellular_component | nucleus |
L | 0005654 | cellular_component | nucleoplasm |
L | 0005829 | cellular_component | cytosol |
L | 0006024 | biological_process | glycosaminoglycan biosynthetic process |
L | 0006065 | biological_process | UDP-glucuronate biosynthetic process |
L | 0015012 | biological_process | heparan sulfate proteoglycan biosynthetic process |
L | 0016491 | molecular_function | oxidoreductase activity |
L | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
L | 0030206 | biological_process | chondroitin sulfate biosynthetic process |
L | 0034214 | biological_process | protein hexamerization |
L | 0042802 | molecular_function | identical protein binding |
L | 0048666 | biological_process | neuron development |
L | 0051287 | molecular_function | NAD binding |
L | 0070062 | cellular_component | extracellular exosome |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL A 3001 |
Chain | Residue |
A | MET419 |
site_id | AC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL G 3002 |
Chain | Residue |
G | MET419 |
site_id | AC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL I 3003 |
Chain | Residue |
I | MET419 |
site_id | AC4 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL F 3004 |
Chain | Residue |
F | MET419 |
site_id | AC5 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL C 3005 |
Chain | Residue |
C | MET419 |
site_id | AC6 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL D 3006 |
Chain | Residue |
D | MET419 |
site_id | AC7 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL L 3007 |
Chain | Residue |
L | MET419 |
site_id | AC8 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL K 3008 |
Chain | Residue |
K | MET419 |
site_id | AC9 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL B 3009 |
Chain | Residue |
B | MET419 |
site_id | BC1 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL H 3010 |
Chain | Residue |
H | MET419 |
site_id | BC2 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL E 3011 |
Chain | Residue |
E | MET419 |
site_id | BC3 |
Number of Residues | 1 |
Details | BINDING SITE FOR RESIDUE CL J 3012 |
Chain | Residue |
J | MET419 |
site_id | BC4 |
Number of Residues | 31 |
Details | BINDING SITE FOR RESIDUE NAI A 500 |
Chain | Residue |
A | ILE10 |
A | GLY11 |
A | GLY13 |
A | TYR14 |
A | VAL15 |
A | ASP36 |
A | VAL37 |
A | ARG41 |
A | SER88 |
A | VAL89 |
A | ASN90 |
A | THR91 |
A | TYR108 |
A | SER130 |
A | THR131 |
A | GLU161 |
A | LEU163 |
A | GLU165 |
A | CYS276 |
A | LYS279 |
A | ARG346 |
A | UPG501 |
A | HOH3010 |
A | HOH3020 |
A | HOH3024 |
A | HOH3033 |
A | HOH3042 |
A | HOH3045 |
A | HOH3130 |
A | HOH3136 |
A | HOH3161 |
site_id | BC5 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE UPG A 501 |
Chain | Residue |
A | GLU161 |
A | PHE162 |
A | LEU163 |
A | ALA164 |
A | GLU165 |
A | LYS220 |
A | ASN224 |
A | ILE231 |
A | PHE265 |
A | LEU266 |
A | LYS267 |
A | SER269 |
A | PHE272 |
A | GLY273 |
A | CYS276 |
A | PHE277 |
A | PHE338 |
A | LYS339 |
A | ARG442 |
A | NAI500 |
A | HOH3020 |
A | HOH3021 |
A | HOH3041 |
A | HOH3042 |
A | HOH3044 |
A | HOH3052 |
A | HOH3072 |
A | HOH3085 |
A | HOH3127 |
B | ARG260 |
site_id | BC6 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE NAI B 500 |
Chain | Residue |
B | HOH3059 |
B | HOH3144 |
B | HOH3155 |
B | HOH3156 |
B | ILE10 |
B | GLY11 |
B | GLY13 |
B | TYR14 |
B | VAL15 |
B | ASP36 |
B | VAL37 |
B | ARG41 |
B | SER88 |
B | VAL89 |
B | ASN90 |
B | THR91 |
B | TYR108 |
B | SER130 |
B | THR131 |
B | GLU161 |
B | LEU163 |
B | GLU165 |
B | CYS276 |
B | LYS279 |
B | ARG346 |
B | UPG501 |
B | HOH3013 |
B | HOH3021 |
B | HOH3024 |
B | HOH3040 |
site_id | BC7 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE UPG B 501 |
Chain | Residue |
A | ARG260 |
B | GLU161 |
B | PHE162 |
B | LEU163 |
B | ALA164 |
B | GLU165 |
B | LYS220 |
B | ASN224 |
B | ILE231 |
B | PHE265 |
B | LEU266 |
B | LYS267 |
B | SER269 |
B | PHE272 |
B | GLY273 |
B | CYS276 |
B | PHE277 |
B | PHE338 |
B | LYS339 |
B | ARG442 |
B | NAI500 |
B | HOH3013 |
B | HOH3019 |
B | HOH3023 |
B | HOH3024 |
B | HOH3027 |
B | HOH3036 |
B | HOH3056 |
B | HOH3077 |
site_id | BC8 |
Number of Residues | 31 |
Details | BINDING SITE FOR RESIDUE NAI C 500 |
Chain | Residue |
C | ILE10 |
C | GLY11 |
C | GLY13 |
C | TYR14 |
C | VAL15 |
C | ASP36 |
C | VAL37 |
C | ARG41 |
C | SER88 |
C | VAL89 |
C | ASN90 |
C | THR91 |
C | TYR108 |
C | SER130 |
C | THR131 |
C | GLU161 |
C | LEU163 |
C | GLU165 |
C | CYS276 |
C | LYS279 |
C | ARG346 |
C | UPG501 |
C | HOH3015 |
C | HOH3019 |
C | HOH3020 |
C | HOH3021 |
C | HOH3024 |
C | HOH3066 |
C | HOH3115 |
C | HOH3130 |
C | HOH3269 |
site_id | BC9 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE UPG C 501 |
Chain | Residue |
C | GLU161 |
C | PHE162 |
C | LEU163 |
C | ALA164 |
C | GLU165 |
C | LYS220 |
C | ASN224 |
C | ILE231 |
C | PHE265 |
C | LEU266 |
C | LYS267 |
C | SER269 |
C | PHE272 |
C | GLY273 |
C | CYS276 |
C | PHE277 |
C | PHE338 |
C | LYS339 |
C | ARG442 |
C | NAI500 |
C | HOH3015 |
C | HOH3018 |
C | HOH3019 |
C | HOH3028 |
C | HOH3035 |
C | HOH3050 |
C | HOH3053 |
C | HOH3076 |
C | HOH3145 |
D | ARG260 |
site_id | CC1 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE NAI D 500 |
Chain | Residue |
D | ILE10 |
D | GLY11 |
D | GLY13 |
D | TYR14 |
D | VAL15 |
D | ASP36 |
D | VAL37 |
D | ARG41 |
D | SER88 |
D | VAL89 |
D | ASN90 |
D | THR91 |
D | TYR108 |
D | SER130 |
D | THR131 |
D | GLU161 |
D | LEU163 |
D | GLU165 |
D | CYS276 |
D | LYS279 |
D | ARG346 |
D | UPG501 |
D | HOH3013 |
D | HOH3018 |
D | HOH3028 |
D | HOH3044 |
D | HOH3103 |
D | HOH3159 |
D | HOH3181 |
D | HOH3182 |
site_id | CC2 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE UPG D 501 |
Chain | Residue |
C | ARG260 |
D | GLU161 |
D | PHE162 |
D | LEU163 |
D | ALA164 |
D | GLU165 |
D | LYS220 |
D | ASN224 |
D | ILE231 |
D | PHE265 |
D | LEU266 |
D | LYS267 |
D | SER269 |
D | PHE272 |
D | GLY273 |
D | CYS276 |
D | PHE277 |
D | PHE338 |
D | LYS339 |
D | ARG442 |
D | NAI500 |
D | HOH3013 |
D | HOH3019 |
D | HOH3021 |
D | HOH3026 |
D | HOH3037 |
D | HOH3038 |
D | HOH3044 |
D | HOH3052 |
D | HOH3164 |
site_id | CC3 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE NAI E 500 |
Chain | Residue |
E | ILE10 |
E | GLY11 |
E | GLY13 |
E | TYR14 |
E | VAL15 |
E | ASP36 |
E | VAL37 |
E | ARG41 |
E | SER88 |
E | VAL89 |
E | ASN90 |
E | THR91 |
E | TYR108 |
E | SER130 |
E | THR131 |
E | GLU161 |
E | LEU163 |
E | GLU165 |
E | CYS276 |
E | LYS279 |
E | ARG346 |
E | UPG501 |
E | HOH3025 |
E | HOH3026 |
E | HOH3035 |
E | HOH3050 |
E | HOH3051 |
E | HOH3067 |
E | HOH3193 |
site_id | CC4 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE UPG E 501 |
Chain | Residue |
E | GLU161 |
E | PHE162 |
E | LEU163 |
E | ALA164 |
E | GLU165 |
E | LYS220 |
E | ASN224 |
E | ILE231 |
E | PHE265 |
E | LEU266 |
E | LYS267 |
E | SER269 |
E | PHE272 |
E | GLY273 |
E | CYS276 |
E | PHE277 |
E | PHE338 |
E | LYS339 |
E | ARG442 |
E | NAI500 |
E | HOH3017 |
E | HOH3025 |
E | HOH3027 |
E | HOH3030 |
E | HOH3037 |
E | HOH3050 |
E | HOH3086 |
E | HOH3116 |
E | HOH3129 |
F | ARG260 |
site_id | CC5 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE NAI F 500 |
Chain | Residue |
F | ILE10 |
F | GLY11 |
F | GLY13 |
F | TYR14 |
F | VAL15 |
F | ASP36 |
F | VAL37 |
F | ARG41 |
F | SER88 |
F | VAL89 |
F | ASN90 |
F | THR91 |
F | TYR108 |
F | SER130 |
F | THR131 |
F | GLU161 |
F | LEU163 |
F | GLU165 |
F | CYS276 |
F | LYS279 |
F | ARG346 |
F | UPG501 |
F | HOH3011 |
F | HOH3019 |
F | HOH3026 |
F | HOH3036 |
F | HOH3088 |
F | HOH3163 |
F | HOH3164 |
site_id | CC6 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE UPG F 501 |
Chain | Residue |
E | ARG260 |
F | GLU161 |
F | PHE162 |
F | LEU163 |
F | ALA164 |
F | GLU165 |
F | LYS220 |
F | ASN224 |
F | ILE231 |
F | PHE265 |
F | LEU266 |
F | LYS267 |
F | SER269 |
F | PHE272 |
F | GLY273 |
F | CYS276 |
F | PHE277 |
F | PHE338 |
F | LYS339 |
F | ARG442 |
F | NAI500 |
F | HOH3011 |
F | HOH3017 |
F | HOH3023 |
F | HOH3026 |
F | HOH3029 |
F | HOH3041 |
F | HOH3042 |
F | HOH3053 |
F | HOH3150 |
site_id | CC7 |
Number of Residues | 31 |
Details | BINDING SITE FOR RESIDUE NAI G 500 |
Chain | Residue |
G | ILE10 |
G | GLY11 |
G | GLY13 |
G | TYR14 |
G | VAL15 |
G | ASP36 |
G | VAL37 |
G | ARG41 |
G | SER88 |
G | VAL89 |
G | ASN90 |
G | THR91 |
G | TYR108 |
G | SER130 |
G | THR131 |
G | GLU161 |
G | LEU163 |
G | GLU165 |
G | CYS276 |
G | LYS279 |
G | ARG346 |
G | UPG501 |
G | HOH3007 |
G | HOH3008 |
G | HOH3022 |
G | HOH3033 |
G | HOH3059 |
G | HOH3079 |
G | HOH3088 |
G | HOH3123 |
G | HOH3130 |
site_id | CC8 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE UPG G 501 |
Chain | Residue |
G | GLU161 |
G | PHE162 |
G | LEU163 |
G | ALA164 |
G | GLU165 |
G | LYS220 |
G | ASN224 |
G | ILE231 |
G | PHE265 |
G | LEU266 |
G | LYS267 |
G | SER269 |
G | PHE272 |
G | GLY273 |
G | CYS276 |
G | PHE277 |
G | PHE338 |
G | LYS339 |
G | ARG442 |
G | NAI500 |
G | HOH3007 |
G | HOH3022 |
G | HOH3040 |
G | HOH3041 |
G | HOH3063 |
G | HOH3068 |
G | HOH3074 |
G | HOH3077 |
H | ARG260 |
site_id | CC9 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE NAI H 500 |
Chain | Residue |
H | ILE10 |
H | GLY11 |
H | GLY13 |
H | TYR14 |
H | VAL15 |
H | ASP36 |
H | VAL37 |
H | ARG41 |
H | SER88 |
H | VAL89 |
H | ASN90 |
H | THR91 |
H | TYR108 |
H | SER130 |
H | THR131 |
H | GLU161 |
H | LEU163 |
H | GLU165 |
H | CYS276 |
H | LYS279 |
H | ARG346 |
H | UPG501 |
H | HOH3014 |
H | HOH3021 |
H | HOH3041 |
H | HOH3048 |
H | HOH3095 |
H | HOH3097 |
H | HOH3098 |
H | HOH3109 |
site_id | DC1 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE UPG H 501 |
Chain | Residue |
G | ARG260 |
H | GLU161 |
H | PHE162 |
H | LEU163 |
H | ALA164 |
H | GLU165 |
H | LYS220 |
H | ASN224 |
H | ILE231 |
H | PHE265 |
H | LEU266 |
H | LYS267 |
H | SER269 |
H | PHE272 |
H | GLY273 |
H | CYS276 |
H | PHE277 |
H | PHE338 |
H | LYS339 |
H | ARG442 |
H | NAI500 |
H | HOH3014 |
H | HOH3017 |
H | HOH3024 |
H | HOH3034 |
H | HOH3048 |
H | HOH3053 |
H | HOH3054 |
H | HOH3068 |
site_id | DC2 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE NAI I 500 |
Chain | Residue |
I | ILE10 |
I | GLY11 |
I | GLY13 |
I | TYR14 |
I | VAL15 |
I | ASP36 |
I | VAL37 |
I | ARG41 |
I | SER88 |
I | VAL89 |
I | ASN90 |
I | THR91 |
I | TYR108 |
I | SER130 |
I | THR131 |
I | GLU161 |
I | LEU163 |
I | GLU165 |
I | CYS276 |
I | LYS279 |
I | ARG346 |
I | UPG501 |
I | HOH3010 |
I | HOH3029 |
I | HOH3036 |
I | HOH3039 |
I | HOH3042 |
I | HOH3182 |
I | HOH3183 |
site_id | DC3 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE UPG I 501 |
Chain | Residue |
I | GLU161 |
I | PHE162 |
I | LEU163 |
I | ALA164 |
I | GLU165 |
I | LYS220 |
I | ASN224 |
I | ILE231 |
I | PHE265 |
I | LEU266 |
I | LYS267 |
I | SER269 |
I | PHE272 |
I | GLY273 |
I | CYS276 |
I | PHE277 |
I | PHE338 |
I | LYS339 |
I | ARG442 |
I | NAI500 |
I | HOH3019 |
I | HOH3026 |
I | HOH3029 |
I | HOH3036 |
I | HOH3056 |
I | HOH3078 |
I | HOH3109 |
I | HOH3120 |
I | HOH3172 |
J | ARG260 |
site_id | DC4 |
Number of Residues | 31 |
Details | BINDING SITE FOR RESIDUE NAI J 500 |
Chain | Residue |
J | ILE10 |
J | GLY11 |
J | GLY13 |
J | TYR14 |
J | VAL15 |
J | ASP36 |
J | VAL37 |
J | ARG41 |
J | SER88 |
J | VAL89 |
J | ASN90 |
J | THR91 |
J | TYR108 |
J | ALA111 |
J | SER130 |
J | THR131 |
J | GLU161 |
J | LEU163 |
J | GLU165 |
J | CYS276 |
J | LYS279 |
J | ARG346 |
J | UPG501 |
J | HOH3021 |
J | HOH3027 |
J | HOH3046 |
J | HOH3049 |
J | HOH3051 |
J | HOH3063 |
J | HOH3173 |
J | HOH3174 |
site_id | DC5 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE UPG J 501 |
Chain | Residue |
I | ARG260 |
J | GLU161 |
J | PHE162 |
J | LEU163 |
J | ALA164 |
J | GLU165 |
J | LYS220 |
J | ASN224 |
J | ILE231 |
J | PHE265 |
J | LEU266 |
J | LYS267 |
J | SER269 |
J | PHE272 |
J | GLY273 |
J | CYS276 |
J | PHE277 |
J | PHE338 |
J | LYS339 |
J | ARG442 |
J | NAI500 |
J | HOH3021 |
J | HOH3022 |
J | HOH3029 |
J | HOH3045 |
J | HOH3046 |
J | HOH3050 |
J | HOH3062 |
J | HOH3085 |
J | HOH3164 |
site_id | DC6 |
Number of Residues | 30 |
Details | BINDING SITE FOR RESIDUE NAI K 500 |
Chain | Residue |
K | ILE10 |
K | GLY11 |
K | GLY13 |
K | TYR14 |
K | VAL15 |
K | ASP36 |
K | VAL37 |
K | ARG41 |
K | SER88 |
K | VAL89 |
K | ASN90 |
K | THR91 |
K | TYR108 |
K | SER130 |
K | THR131 |
K | GLU161 |
K | LEU163 |
K | GLU165 |
K | CYS276 |
K | LYS279 |
K | ARG346 |
K | UPG501 |
K | HOH3029 |
K | HOH3031 |
K | HOH3039 |
K | HOH3042 |
K | HOH3048 |
K | HOH3125 |
K | HOH3126 |
K | HOH3162 |
site_id | DC7 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE UPG K 501 |
Chain | Residue |
K | GLU161 |
K | PHE162 |
K | LEU163 |
K | ALA164 |
K | GLU165 |
K | LYS220 |
K | ASN224 |
K | ILE231 |
K | PHE265 |
K | LYS267 |
K | SER269 |
K | PHE272 |
K | GLY273 |
K | CYS276 |
K | PHE277 |
K | PHE338 |
K | LYS339 |
K | ARG442 |
K | NAI500 |
K | HOH3034 |
K | HOH3042 |
K | HOH3048 |
K | HOH3050 |
K | HOH3055 |
K | HOH3057 |
K | HOH3062 |
K | HOH3083 |
K | HOH3201 |
L | ARG260 |
site_id | DC8 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE NAI L 500 |
Chain | Residue |
L | ILE10 |
L | GLY11 |
L | GLY13 |
L | TYR14 |
L | VAL15 |
L | ASP36 |
L | VAL37 |
L | ARG41 |
L | SER88 |
L | VAL89 |
L | ASN90 |
L | THR91 |
L | TYR108 |
L | ALA111 |
L | SER130 |
L | THR131 |
L | GLU161 |
L | LEU163 |
L | GLU165 |
L | CYS276 |
L | LYS279 |
L | ARG346 |
L | UPG501 |
L | HOH3015 |
L | HOH3017 |
L | HOH3032 |
L | HOH3048 |
L | HOH3105 |
L | HOH3144 |
site_id | DC9 |
Number of Residues | 29 |
Details | BINDING SITE FOR RESIDUE UPG L 501 |
Chain | Residue |
K | ARG260 |
L | GLU161 |
L | PHE162 |
L | LEU163 |
L | ALA164 |
L | GLU165 |
L | LYS220 |
L | ASN224 |
L | ILE231 |
L | PHE265 |
L | LYS267 |
L | SER269 |
L | PHE272 |
L | GLY273 |
L | CYS276 |
L | PHE277 |
L | PHE338 |
L | LYS339 |
L | ARG442 |
L | NAI500 |
L | HOH3015 |
L | HOH3025 |
L | HOH3029 |
L | HOH3032 |
L | HOH3036 |
L | HOH3041 |
L | HOH3070 |
L | HOH3108 |
L | HOH3111 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 24 |
Details | ACT_SITE: Proton donor/acceptor => ECO:0000269|PubMed:22123821 |
Chain | Residue | Details |
A | GLU161 | |
E | LYS220 | |
F | GLU161 | |
F | LYS220 | |
G | GLU161 | |
G | LYS220 | |
H | GLU161 | |
H | LYS220 | |
I | GLU161 | |
I | LYS220 | |
J | GLU161 | |
A | LYS220 | |
J | LYS220 | |
K | GLU161 | |
K | LYS220 | |
L | GLU161 | |
L | LYS220 | |
B | GLU161 | |
B | LYS220 | |
C | GLU161 | |
C | LYS220 | |
D | GLU161 | |
D | LYS220 | |
E | GLU161 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | ACT_SITE: Nucleophile => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21984906, ECO:0000269|PubMed:22123821 |
Chain | Residue | Details |
A | CYS276 | |
J | CYS276 | |
K | CYS276 | |
L | CYS276 | |
B | CYS276 | |
C | CYS276 | |
D | CYS276 | |
E | CYS276 | |
F | CYS276 | |
G | CYS276 | |
H | CYS276 | |
I | CYS276 |
site_id | SWS_FT_FI3 |
Number of Residues | 60 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK |
Chain | Residue | Details |
A | GLY11 | |
B | CYS276 | |
C | GLY11 | |
C | ASP36 | |
C | ARG41 | |
C | VAL89 | |
C | CYS276 | |
D | GLY11 | |
D | ASP36 | |
D | ARG41 | |
D | VAL89 | |
A | ASP36 | |
D | CYS276 | |
E | GLY11 | |
E | ASP36 | |
E | ARG41 | |
E | VAL89 | |
E | CYS276 | |
F | GLY11 | |
F | ASP36 | |
F | ARG41 | |
F | VAL89 | |
A | ARG41 | |
F | CYS276 | |
G | GLY11 | |
G | ASP36 | |
G | ARG41 | |
G | VAL89 | |
G | CYS276 | |
H | GLY11 | |
H | ASP36 | |
H | ARG41 | |
H | VAL89 | |
A | VAL89 | |
H | CYS276 | |
I | GLY11 | |
I | ASP36 | |
I | ARG41 | |
I | VAL89 | |
I | CYS276 | |
J | GLY11 | |
J | ASP36 | |
J | ARG41 | |
J | VAL89 | |
A | CYS276 | |
J | CYS276 | |
K | GLY11 | |
K | ASP36 | |
K | ARG41 | |
K | VAL89 | |
K | CYS276 | |
L | GLY11 | |
L | ASP36 | |
L | ARG41 | |
L | VAL89 | |
B | GLY11 | |
L | CYS276 | |
B | ASP36 | |
B | ARG41 | |
B | VAL89 |
site_id | SWS_FT_FI4 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445 |
Chain | Residue | Details |
A | SER130 | |
J | SER130 | |
K | SER130 | |
L | SER130 | |
B | SER130 | |
C | SER130 | |
D | SER130 | |
E | SER130 | |
F | SER130 | |
G | SER130 | |
H | SER130 | |
I | SER130 |
site_id | SWS_FT_FI5 |
Number of Residues | 48 |
Details | BINDING: BINDING => ECO:0000269|PubMed:23106432, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF |
Chain | Residue | Details |
A | GLU161 | |
C | LYS220 | |
C | LYS267 | |
C | PHE338 | |
D | GLU161 | |
D | LYS220 | |
D | LYS267 | |
D | PHE338 | |
E | GLU161 | |
E | LYS220 | |
E | LYS267 | |
A | LYS220 | |
E | PHE338 | |
F | GLU161 | |
F | LYS220 | |
F | LYS267 | |
F | PHE338 | |
G | GLU161 | |
G | LYS220 | |
G | LYS267 | |
G | PHE338 | |
H | GLU161 | |
A | LYS267 | |
H | LYS220 | |
H | LYS267 | |
H | PHE338 | |
I | GLU161 | |
I | LYS220 | |
I | LYS267 | |
I | PHE338 | |
J | GLU161 | |
J | LYS220 | |
J | LYS267 | |
A | PHE338 | |
J | PHE338 | |
K | GLU161 | |
K | LYS220 | |
K | LYS267 | |
K | PHE338 | |
L | GLU161 | |
L | LYS220 | |
L | LYS267 | |
L | PHE338 | |
B | GLU161 | |
B | LYS220 | |
B | LYS267 | |
B | PHE338 | |
C | GLU161 |
site_id | SWS_FT_FI6 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21502315, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4 |
Chain | Residue | Details |
A | GLU165 | |
J | GLU165 | |
K | GLU165 | |
L | GLU165 | |
B | GLU165 | |
C | GLU165 | |
D | GLU165 | |
E | GLU165 | |
F | GLU165 | |
G | GLU165 | |
H | GLU165 | |
I | GLU165 |
site_id | SWS_FT_FI7 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:23106432, ECO:0000269|PubMed:27966912, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF, ECO:0007744|PDB:5TJH |
Chain | Residue | Details |
A | ARG260 | |
J | ARG260 | |
K | ARG260 | |
L | ARG260 | |
B | ARG260 | |
C | ARG260 | |
D | ARG260 | |
E | ARG260 | |
F | ARG260 | |
G | ARG260 | |
H | ARG260 | |
I | ARG260 |
site_id | SWS_FT_FI8 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:21502315, ECO:0000269|PubMed:21595445, ECO:0000269|PubMed:21984906, ECO:0000269|PubMed:22123821, ECO:0007744|PDB:2Q3E, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:3TDK |
Chain | Residue | Details |
A | ARG346 | |
J | ARG346 | |
K | ARG346 | |
L | ARG346 | |
B | ARG346 | |
C | ARG346 | |
D | ARG346 | |
E | ARG346 | |
F | ARG346 | |
G | ARG346 | |
H | ARG346 | |
I | ARG346 |
site_id | SWS_FT_FI9 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000269|PubMed:22123821, ECO:0000269|PubMed:23106432, ECO:0000305|PubMed:21502315, ECO:0000305|PubMed:21595445, ECO:0007744|PDB:2QG4, ECO:0007744|PDB:3KHU, ECO:0007744|PDB:3PRJ, ECO:0007744|PDB:3PTZ, ECO:0007744|PDB:4EDF |
Chain | Residue | Details |
A | ARG442 | |
J | ARG442 | |
K | ARG442 | |
L | ARG442 | |
B | ARG442 | |
C | ARG442 | |
D | ARG442 | |
E | ARG442 | |
F | ARG442 | |
G | ARG442 | |
H | ARG442 | |
I | ARG442 |
site_id | SWS_FT_FI10 |
Number of Residues | 12 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
A | LYS107 | |
J | LYS107 | |
K | LYS107 | |
L | LYS107 | |
B | LYS107 | |
C | LYS107 | |
D | LYS107 | |
E | LYS107 | |
F | LYS107 | |
G | LYS107 | |
H | LYS107 | |
I | LYS107 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
A | ASP280 | |
A | ASN224 | |
A | THR131 | |
A | CYS276 | |
A | LYS220 | |
A | GLU165 |
site_id | CSA10 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
J | ASP280 | |
J | ASN224 | |
J | THR131 | |
J | CYS276 | |
J | LYS220 | |
J | GLU165 |
site_id | CSA11 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
K | ASP280 | |
K | ASN224 | |
K | THR131 | |
K | CYS276 | |
K | LYS220 | |
K | GLU165 |
site_id | CSA12 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
L | ASP280 | |
L | ASN224 | |
L | THR131 | |
L | CYS276 | |
L | LYS220 | |
L | GLU165 |
site_id | CSA2 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
B | ASP280 | |
B | ASN224 | |
B | THR131 | |
B | CYS276 | |
B | LYS220 | |
B | GLU165 |
site_id | CSA3 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
C | ASP280 | |
C | ASN224 | |
C | THR131 | |
C | CYS276 | |
C | LYS220 | |
C | GLU165 |
site_id | CSA4 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
D | ASP280 | |
D | ASN224 | |
D | THR131 | |
D | CYS276 | |
D | LYS220 | |
D | GLU165 |
site_id | CSA5 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
E | ASP280 | |
E | ASN224 | |
E | THR131 | |
E | CYS276 | |
E | LYS220 | |
E | GLU165 |
site_id | CSA6 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
F | ASP280 | |
F | ASN224 | |
F | THR131 | |
F | CYS276 | |
F | LYS220 | |
F | GLU165 |
site_id | CSA7 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
G | ASP280 | |
G | ASN224 | |
G | THR131 | |
G | CYS276 | |
G | LYS220 | |
G | GLU165 |
site_id | CSA8 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
H | ASP280 | |
H | ASN224 | |
H | THR131 | |
H | CYS276 | |
H | LYS220 | |
H | GLU165 |
site_id | CSA9 |
Number of Residues | 6 |
Details | Annotated By Reference To The Literature 1dli |
Chain | Residue | Details |
I | ASP280 | |
I | ASN224 | |
I | THR131 | |
I | CYS276 | |
I | LYS220 | |
I | GLU165 |