2PYO
Drosophila nucleosome core
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000785 | cellular_component | chromatin |
| A | 0000786 | cellular_component | nucleosome |
| A | 0003677 | molecular_function | DNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005694 | cellular_component | chromosome |
| A | 0005700 | cellular_component | polytene chromosome |
| A | 0006334 | biological_process | nucleosome assembly |
| A | 0030527 | molecular_function | structural constituent of chromatin |
| A | 0031492 | molecular_function | nucleosomal DNA binding |
| A | 0035059 | cellular_component | RCAF complex |
| A | 0046982 | molecular_function | protein heterodimerization activity |
| B | 0000228 | cellular_component | nuclear chromosome |
| B | 0000786 | cellular_component | nucleosome |
| B | 0003676 | molecular_function | nucleic acid binding |
| B | 0003677 | molecular_function | DNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005634 | cellular_component | nucleus |
| B | 0005694 | cellular_component | chromosome |
| B | 0006334 | biological_process | nucleosome assembly |
| B | 0030527 | molecular_function | structural constituent of chromatin |
| B | 0035059 | cellular_component | RCAF complex |
| B | 0046982 | molecular_function | protein heterodimerization activity |
| C | 0000786 | cellular_component | nucleosome |
| C | 0003677 | molecular_function | DNA binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0005634 | cellular_component | nucleus |
| C | 0005694 | cellular_component | chromosome |
| C | 0005700 | cellular_component | polytene chromosome |
| C | 0005704 | cellular_component | polytene chromosome band |
| C | 0006325 | biological_process | chromatin organization |
| C | 0006334 | biological_process | nucleosome assembly |
| C | 0007526 | biological_process | larval somatic muscle development |
| C | 0030527 | molecular_function | structural constituent of chromatin |
| C | 0031492 | molecular_function | nucleosomal DNA binding |
| C | 0046982 | molecular_function | protein heterodimerization activity |
| C | 0070828 | biological_process | heterochromatin organization |
| D | 0000786 | cellular_component | nucleosome |
| D | 0003677 | molecular_function | DNA binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005634 | cellular_component | nucleus |
| D | 0005694 | cellular_component | chromosome |
| D | 0006325 | biological_process | chromatin organization |
| D | 0030527 | molecular_function | structural constituent of chromatin |
| D | 0044877 | molecular_function | protein-containing complex binding |
| D | 0046982 | molecular_function | protein heterodimerization activity |
| E | 0000785 | cellular_component | chromatin |
| E | 0000786 | cellular_component | nucleosome |
| E | 0003677 | molecular_function | DNA binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0005634 | cellular_component | nucleus |
| E | 0005694 | cellular_component | chromosome |
| E | 0005700 | cellular_component | polytene chromosome |
| E | 0006334 | biological_process | nucleosome assembly |
| E | 0030527 | molecular_function | structural constituent of chromatin |
| E | 0031492 | molecular_function | nucleosomal DNA binding |
| E | 0035059 | cellular_component | RCAF complex |
| E | 0046982 | molecular_function | protein heterodimerization activity |
| F | 0000228 | cellular_component | nuclear chromosome |
| F | 0000786 | cellular_component | nucleosome |
| F | 0003676 | molecular_function | nucleic acid binding |
| F | 0003677 | molecular_function | DNA binding |
| F | 0005515 | molecular_function | protein binding |
| F | 0005634 | cellular_component | nucleus |
| F | 0005694 | cellular_component | chromosome |
| F | 0006334 | biological_process | nucleosome assembly |
| F | 0030527 | molecular_function | structural constituent of chromatin |
| F | 0035059 | cellular_component | RCAF complex |
| F | 0046982 | molecular_function | protein heterodimerization activity |
| G | 0000786 | cellular_component | nucleosome |
| G | 0003677 | molecular_function | DNA binding |
| G | 0005515 | molecular_function | protein binding |
| G | 0005634 | cellular_component | nucleus |
| G | 0005694 | cellular_component | chromosome |
| G | 0005700 | cellular_component | polytene chromosome |
| G | 0005704 | cellular_component | polytene chromosome band |
| G | 0006325 | biological_process | chromatin organization |
| G | 0006334 | biological_process | nucleosome assembly |
| G | 0007526 | biological_process | larval somatic muscle development |
| G | 0030527 | molecular_function | structural constituent of chromatin |
| G | 0031492 | molecular_function | nucleosomal DNA binding |
| G | 0046982 | molecular_function | protein heterodimerization activity |
| G | 0070828 | biological_process | heterochromatin organization |
| H | 0000786 | cellular_component | nucleosome |
| H | 0003677 | molecular_function | DNA binding |
| H | 0005515 | molecular_function | protein binding |
| H | 0005634 | cellular_component | nucleus |
| H | 0005694 | cellular_component | chromosome |
| H | 0006325 | biological_process | chromatin organization |
| H | 0030527 | molecular_function | structural constituent of chromatin |
| H | 0044877 | molecular_function | protein-containing complex binding |
| H | 0046982 | molecular_function | protein heterodimerization activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MN I 1007 |
| Chain | Residue |
| I | DG48 |
| site_id | AC2 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MN I 1008 |
| Chain | Residue |
| I | DG61 |
| site_id | AC3 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MN I 1010 |
| Chain | Residue |
| I | DG27 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MN I 1011 |
| Chain | Residue |
| I | DG5 |
| J | DG-6 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MN I 1012 |
| Chain | Residue |
| I | DG-3 |
| I | DG-2 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MN I 1013 |
| Chain | Residue |
| I | DG-35 |
| I | DG-34 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MN J 1001 |
| Chain | Residue |
| J | DG61 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MN J 1003 |
| Chain | Residue |
| I | DT67 |
| J | DG27 |
| site_id | AC9 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MN J 1004 |
| Chain | Residue |
| J | DG-3 |
| site_id | BC1 |
| Number of Residues | 1 |
| Details | BINDING SITE FOR RESIDUE MN J 1005 |
| Chain | Residue |
| J | DG48 |
| site_id | BC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MN J 1009 |
| Chain | Residue |
| J | DG-35 |
| J | DG-34 |
| site_id | BC3 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE MN J 1014 |
| Chain | Residue |
| I | DG-6 |
| J | DG5 |
| site_id | BC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE CL A 1017 |
| Chain | Residue |
| A | PRO121 |
| A | LYS122 |
| site_id | BC5 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL D 1016 |
| Chain | Residue |
| C | GLY45 |
| D | THR87 |
| D | SER88 |
| site_id | BC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE MN E 1002 |
| Chain | Residue |
| D | VAL45 |
| E | ASP77 |
| E | HOH1029 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL E 1018 |
| Chain | Residue |
| E | MET120 |
| E | PRO121 |
| E | LYS122 |
| site_id | BC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL H 1015 |
| Chain | Residue |
| G | GLY45 |
| G | ALA46 |
| H | THR87 |
| H | SER88 |
Functional Information from PROSITE/UniProt
| site_id | PS00322 |
| Number of Residues | 7 |
| Details | HISTONE_H3_1 Histone H3 signature 1. KAPRKQL |
| Chain | Residue | Details |
| A | LYS14-LEU20 |
| site_id | PS00959 |
| Number of Residues | 9 |
| Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
| Chain | Residue | Details |
| A | PRO66-ILE74 |
| site_id | PS00046 |
| Number of Residues | 7 |
| Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
| Chain | Residue | Details |
| C | ALA20-VAL26 |
| site_id | PS00357 |
| Number of Residues | 23 |
| Details | HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG |
| Chain | Residue | Details |
| D | ARG89-GLY111 |
| site_id | PS00047 |
| Number of Residues | 5 |
| Details | HISTONE_H4 Histone H4 signature. GAKRH |
| Chain | Residue | Details |
| B | GLY14-HIS18 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphoserine => ECO:0000305|PubMed:15133681 |
| Chain | Residue | Details |
| C | SER1 | |
| G | SER1 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-succinyllysine => ECO:0000269|PubMed:22389435 |
| Chain | Residue | Details |
| C | LYS35 | |
| G | LYS35 | |
| F | LYS5 | |
| F | LYS12 | |
| H | LYS113 | |
| H | LYS117 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | MOD_RES: N5-methylglutamine => ECO:0000250 |
| Chain | Residue | Details |
| C | GLN103 | |
| E | LYS37 | |
| G | GLN103 | |
| B | LYS79 | |
| B | LYS91 | |
| F | LYS31 | |
| F | LYS77 | |
| F | LYS79 | |
| F | LYS91 | |
| E | LYS36 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | MOD_RES: Phosphothreonine => ECO:0000269|PubMed:15078818, ECO:0000269|PubMed:16230526 |
| Chain | Residue | Details |
| C | THR119 | |
| G | THR119 | |
| F | THR80 | |
| F | THR82 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15386022 |
| Chain | Residue | Details |
| C | LYS118 | |
| A | LYS23 | |
| G | LYS118 | |
| E | LYS23 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-succinyllysine => ECO:0000269|PubMed:22389435 |
| Chain | Residue | Details |
| A | LYS56 | |
| E | LYS56 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435 |
| Chain | Residue | Details |
| A | LYS79 | |
| E | LYS79 |
