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2PX8

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH and 7M-GTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmethyltransferase cap1 activity
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
B0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
B0004483molecular_functionmethyltransferase cap1 activity
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 502
ChainResidue
BASN17
BTYR119
BALA266

site_idAC2
Number of Residues18
DetailsBINDING SITE FOR RESIDUE MGT A 401
ChainResidue
AMLY95
AASN96
ASER150
ASER151
APRO152
AARG213
ASER215
AGOL463
AHOH679
AHOH725
AHOH750
AHOH759
ALYS13
ALEU16
AASN17
AMET19
APHE24
AARG28

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE MGT B 402
ChainResidue
BLYS13
BLEU16
BASN17
BMET19
BLYS21
BPHE24
BARG28
BMLY95
BASN96
BSER150
BSER151
BPRO152
BARG213
BSER215
BASN216
BGOL468
BHOH532
BHOH672

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MGT B 403
ChainResidue
ASER197
AARG201
BGLU22
BPHE25
BHOH729

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE 3PO A 451
ChainResidue
AARG37
AARG41
AVAL55
ASER56
AARG57
AARG84
AHOH682
AHOH921

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE 3PO B 452
ChainResidue
BARG37
BARG41
BVAL55
BSER56
BARG57
BARG84
BHOH844

site_idAC7
Number of Residues19
DetailsBINDING SITE FOR RESIDUE SAH A 500
ChainResidue
ASER56
AGLY58
AGLY81
ACYS82
AGLY83
AGLY86
ATRP87
AMLY105
AHIS110
AGLU111
AVAL130
AASP131
AVAL132
APHE133
AASP146
AHOH503
AHOH505
AHOH556
AHOH746

site_idAC8
Number of Residues21
DetailsBINDING SITE FOR RESIDUE SAH B 500
ChainResidue
BSER56
BGLY58
BGLY81
BCYS82
BGLY83
BGLY86
BTRP87
BMLY105
BHIS110
BGLU111
BVAL130
BASP131
BVAL132
BPHE133
BASP146
BILE147
BGLU149
BHOH510
BHOH512
BHOH516
BHOH619

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A 463
ChainResidue
AASN17
AMLY95
APRO152
AARG265
AMGT401

site_idBC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE GOL B 468
ChainResidue
BASN17
BMLY95
BVAL97
BGLN98
BARG265
BALA266
BVAL267
BGLY268
BMGT402
BHOH513
BHOH672

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"description":"For 2'-O-MTase activity","evidences":[{"source":"UniProtKB","id":"Q6YMS4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsSite: {"description":"mRNA cap binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsSite: {"description":"mRNA cap binding; via carbonyl oxygen","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsSite: {"description":"Essential for 2'-O-methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsSite: {"description":"Essential for 2'-O-methyltransferase and N-7 methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P03314","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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