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2PX2

Crystal structure of the Murray Valley Encephalitis Virus NS5 2'-O Methyltransferase domain in complex with SAH (Monoclinic form 1)

Functional Information from GO Data
ChainGOidnamespacecontents
A0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
A0004483molecular_functionmethyltransferase cap1 activity
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
B0004482molecular_functionmRNA 5'-cap (guanine-N7-)-methyltransferase activity
B0004483molecular_functionmethyltransferase cap1 activity
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 502
ChainResidue
ATYR119
AARG265
AALA266

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 503
ChainResidue
BTYR119
BALA266

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 506
ChainResidue
ALYS61
ASER212
AARG213
AASN216

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL B 507
ChainResidue
BARG57
BLYS61
BARG213
BASN216

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL B 508
ChainResidue
BGLU149
BHOH549

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 510
ChainResidue
AGLU149
AHOH517

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 529
ChainResidue
BVAL207
BARG208
BHOH596

site_idAC8
Number of Residues21
DetailsBINDING SITE FOR RESIDUE SAH A 500
ChainResidue
ASER56
AGLY58
AGLY81
ACYS82
AGLY83
AGLY85
AGLY86
ATRP87
ATHR104
ALYS105
AHIS110
AGLU111
AVAL130
AASP131
AVAL132
APHE133
AASP146
AILE147
AHOH505
AHOH509
AHOH544

site_idAC9
Number of Residues20
DetailsBINDING SITE FOR RESIDUE SAH B 500
ChainResidue
BSER56
BGLY58
BTHR59
BGLY81
BCYS82
BGLY86
BTRP87
BTHR104
BLYS105
BHIS110
BGLU111
BVAL130
BASP131
BVAL132
BPHE133
BASP146
BILE147
BHOH504
BHOH513
BHOH753

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsActive site: {"description":"For 2'-O-MTase activity","evidences":[{"source":"UniProtKB","id":"Q6YMS4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues14
DetailsSite: {"description":"mRNA cap binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsSite: {"description":"mRNA cap binding; via carbonyl oxygen","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsSite: {"description":"Essential for 2'-O-methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsSite: {"description":"Essential for 2'-O-methyltransferase and N-7 methyltransferase activity","evidences":[{"source":"PROSITE-ProRule","id":"PRU00924","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P03314","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

242842

PDB entries from 2025-10-08

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