2PT6
The structure of Plasmodium falciparum spermidine synthase in complex with decarboxylated S-adenosylmethionine
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004766 | molecular_function | spermidine synthase activity |
A | 0005829 | cellular_component | cytosol |
A | 0006596 | biological_process | polyamine biosynthetic process |
A | 0008295 | biological_process | spermidine biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
B | 0003824 | molecular_function | catalytic activity |
B | 0004766 | molecular_function | spermidine synthase activity |
B | 0005829 | cellular_component | cytosol |
B | 0006596 | biological_process | polyamine biosynthetic process |
B | 0008295 | biological_process | spermidine biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
C | 0003824 | molecular_function | catalytic activity |
C | 0004766 | molecular_function | spermidine synthase activity |
C | 0005829 | cellular_component | cytosol |
C | 0006596 | biological_process | polyamine biosynthetic process |
C | 0008295 | biological_process | spermidine biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE S4M A 501 |
Chain | Residue |
A | GLN72 |
A | ILE148 |
A | ASP178 |
A | ALA179 |
A | ASP196 |
A | SER198 |
A | PRO203 |
A | ALA204 |
A | THR206 |
A | LEU207 |
A | TYR264 |
A | GLN93 |
A | TYR102 |
A | HIS103 |
A | GLY124 |
A | GLY125 |
A | ASP127 |
A | CYS146 |
A | GLU147 |
site_id | AC2 |
Number of Residues | 20 |
Details | BINDING SITE FOR RESIDUE S4M B 502 |
Chain | Residue |
B | GLN72 |
B | GLN93 |
B | TYR102 |
B | HIS103 |
B | GLY124 |
B | GLY125 |
B | ASP127 |
B | CYS146 |
B | GLU147 |
B | ILE148 |
B | GLU177 |
B | ASP178 |
B | ALA179 |
B | ASP196 |
B | SER198 |
B | PRO203 |
B | ALA204 |
B | THR206 |
B | LEU207 |
B | TYR264 |
site_id | AC3 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE S4M C 503 |
Chain | Residue |
C | GLN72 |
C | LEU88 |
C | GLN93 |
C | TYR102 |
C | HIS103 |
C | GLY124 |
C | ASP127 |
C | CYS146 |
C | GLU147 |
C | ILE148 |
C | ASP178 |
C | ALA179 |
C | ASP196 |
C | SER198 |
C | PRO203 |
C | ALA204 |
C | THR206 |
C | LEU207 |
C | TYR264 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE 1PG A 701 |
Chain | Residue |
A | TRP43 |
A | SER45 |
A | PHE47 |
A | SER57 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE 1PG C 702 |
Chain | Residue |
B | SER45 |
B | PHE47 |
C | TRP43 |
C | SER45 |
C | PHE47 |
C | SER57 |
site_id | AC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL B 601 |
Chain | Residue |
B | LYS97 |
B | HOH677 |
B | HOH681 |
C | TRP234 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL C 602 |
Chain | Residue |
B | TRP234 |
C | LYS97 |
C | PHE100 |
C | HOH752 |
site_id | AC8 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A 603 |
Chain | Residue |
A | LYS97 |
A | PHE100 |
A | TRP234 |
A | HOH734 |
Functional Information from PROSITE/UniProt
site_id | PS01330 |
Number of Residues | 14 |
Details | PABS_1 Polyamine biosynthesis (PABS) domain signature. VLVVGGGdGgiIrE |
Chain | Residue | Details |
A | VAL120-GLU133 |