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2PM9

Crystal structure of yeast Sec13/31 vertex element of the COPII vesicular coat

Functional Information from GO Data
ChainGOidnamespacecontents
A0006888biological_processendoplasmic reticulum to Golgi vesicle-mediated transport
B0005198molecular_functionstructural molecule activity
B0005515molecular_functionprotein binding
B0005635cellular_componentnuclear envelope
B0005643cellular_componentnuclear pore
B0005774cellular_componentvacuolar membrane
B0005783cellular_componentendoplasmic reticulum
B0005789cellular_componentendoplasmic reticulum membrane
B0006606biological_processprotein import into nucleus
B0006913biological_processnucleocytoplasmic transport
B0012507cellular_componentER to Golgi transport vesicle membrane
B0015031biological_processprotein transport
B0016192biological_processvesicle-mediated transport
B0030127cellular_componentCOPII vesicle coat
B0031080cellular_componentnuclear pore outer ring
B0031410cellular_componentcytoplasmic vesicle
B0032008biological_processpositive regulation of TOR signaling
B0032527biological_processprotein exit from endoplasmic reticulum
B0035859cellular_componentSeh1-associated complex
B0036503biological_processERAD pathway
B0045893biological_processpositive regulation of DNA-templated transcription
B0051028biological_processmRNA transport
B0051664biological_processnuclear pore localization
B0070863biological_processpositive regulation of protein exit from endoplasmic reticulum
B0071944cellular_componentcell periphery
B0090114biological_processCOPII-coated vesicle budding
B1902953biological_processpositive regulation of ER to Golgi vesicle-mediated transport
B1903432biological_processregulation of TORC1 signaling
B1904263biological_processpositive regulation of TORC1 signaling
Functional Information from PROSITE/UniProt
site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. LASGgnNgEIFIWDM
ChainResidueDetails
ALEU124-MET138
AALA228-LEU242

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues79
DetailsRepeat: {"description":"WD 1"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues80
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues81
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues40
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues85
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues79
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues40
DetailsRepeat: {"description":"WD 7"}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues20
DetailsRepeat: {"description":"WD 8; interaction with SEC13"}
ChainResidueDetails

245011

PDB entries from 2025-11-19

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