2PM9
Crystal structure of yeast Sec13/31 vertex element of the COPII vesicular coat
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 200 |
Detector technology | CCD |
Collection date | 2006-06-20 |
Detector | ADSC QUANTUM 4 |
Spacegroup name | P 43 |
Unit cell lengths | 155.163, 155.163, 59.866 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.000 - 3.300 |
Rwork | 0.251 |
R-free | 0.30500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | yeast Sec13 |
RMSD bond length | 0.009 |
RMSD bond angle | 1.636 |
Data reduction software | DENZO |
Data scaling software | SCALEPACK |
Phasing software | AMoRE |
Refinement software | CNS |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 40.000 | 3.420 |
High resolution limit [Å] | 3.300 | 3.300 |
Rmerge | 0.092 | 0.418 |
Number of reflections | 20444 | |
<I/σ(I)> | 11.9 | 2.1 |
Completeness [%] | 92.6 | 76.3 |
Redundancy | 2.7 | 2.2 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.2 | 295 | 8% PEG 3350, 0.1M tri-sodium citrate, 10mM manganese chloride, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 295K |