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2PHN

Crystal structure of an amide bond forming F420-gamma glutamyl ligase from Archaeoglobus fulgidus

Functional Information from GO Data
ChainGOidnamespacecontents
A0005525molecular_functionGTP binding
A0016874molecular_functionligase activity
A0043773molecular_functioncoenzyme F420-0 gamma-glutamyl ligase activity
A0046872molecular_functionmetal ion binding
A0052618molecular_functioncoenzyme F420-0:L-glutamate ligase activity
A0052619molecular_functioncoenzyme F420-1:gamma-L-glutamate ligase activity
A0052645biological_processF420-0 metabolic process
B0005525molecular_functionGTP binding
B0016874molecular_functionligase activity
B0043773molecular_functioncoenzyme F420-0 gamma-glutamyl ligase activity
B0046872molecular_functionmetal ion binding
B0052618molecular_functioncoenzyme F420-0:L-glutamate ligase activity
B0052619molecular_functioncoenzyme F420-1:gamma-L-glutamate ligase activity
B0052645biological_processF420-0 metabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN A 2001
ChainResidue
ATHR151
AGLU208
AGDP2696
AHOH4042
AHOH4080

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN A 2002
ChainResidue
AHOH4065
AHOH4092
AASP109
AASP150
AGDP2696
AHOH4008

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT A 3001
ChainResidue
APHE6
AVAL28
AARG29
AARG219
AHOH4208
BARG2

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACT A 3002
ChainResidue
APHE92
AACT3003
AHOH4044
BARG234
BGLU238
BASP239
BVAL240
BILE241

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE ACT A 3003
ChainResidue
AGLY153
AARG154
ACYS155
AACT3002
AHOH4124
AHOH4209
BPHE156
BILE241

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MN B 2001
ChainResidue
BTHR151
BGLU208
BGDP2697
BHOH3045
BHOH3061

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN B 2002
ChainResidue
BASP109
BASP150
BGDP2697
BHOH3052
BHOH3066
BHOH3167

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ACT B 3001
ChainResidue
BVAL104
BGLY153
BARG154
BCYS155
BHOH3128

site_idAC9
Number of Residues31
DetailsBINDING SITE FOR RESIDUE GDP A 2696
ChainResidue
ALEU11
APRO12
ALEU13
AILE14
ACYS39
ASER40
ATHR41
AVAL42
ALYS45
AASP109
AASN112
ATHR149
AASP150
ATHR151
AMET206
AGLY207
AGLU208
AGLY209
AASP211
AGLY212
AILE213
APRO214
AMN2001
AMN2002
AHOH4008
AHOH4028
AHOH4042
AHOH4080
AHOH4091
AHOH4188
BLEU182

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1001
ChainResidue
ALYS174
ALEU221
AASN222
AHOH4113

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1002
ChainResidue
ALEU204
BLYS174
BASN222
BHOH3118

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE EDO A 1003
ChainResidue
ALEU88
APHE90
AGLU237
AHOH4166
BVAL240
BCYS244

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 1004
ChainResidue
AHOH4015
AHOH4029
AHOH4045
AHOH4062

site_idBC5
Number of Residues31
DetailsBINDING SITE FOR RESIDUE GDP B 2697
ChainResidue
BLEU11
BPRO12
BLEU13
BILE14
BCYS39
BSER40
BTHR41
BVAL42
BLYS45
BASP109
BASN112
BTHR149
BASP150
BTHR151
BMET206
BGLY207
BGLU208
BGLY209
BASP211
BGLY212
BILE213
BPRO214
BMN2001
BMN2002
BHOH3017
BHOH3033
BHOH3045
BHOH3061
BHOH3167
BHOH3269
ALEU182

site_idBC6
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A 4001
ChainResidue
AGLU9
AGLY10
ALEU11
AASP211
AGLY212
AILE213
AHOH4052
AHOH4086
AHOH4290

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues18
DetailsBINDING:
ChainResidueDetails
ALEU11
BLEU11
BSER40
BLYS45
BASP109
BASN112
BASP150
BTHR151
BMET206
BGLU208
ASER40
ALYS45
AASP109
AASN112
AASP150
ATHR151
AMET206
AGLU208

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PDB entries from 2024-06-26

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