Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2PFO

DNA Polymerase lambda in complex with DNA and dUPNPP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MG A 950
ChainResidue
AASP427
AASP429
AMN951
ADUP952
AHOH2812

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MN A 951
ChainResidue
ADUP952
AHOH2807
PDC6
AASP427
AASP429
AASP490
AMG950

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 600
ChainResidue
ASER463
AHOH2848
AHOH2905
TDT10
THOH117
THOH157
THOH241

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 601
ChainResidue
ASER339
AILE341
AALA344
ANA602
PDA5
PHOH80
PHOH152

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 602
ChainResidue
ASER339
ANA601
AHOH2895
AHOH3013
PHOH80
PHOH152
PHOH217

site_idAC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE NA A 603
ChainResidue
ACYS300
ASER301
AILE302
APRO303
AILE305
AHOH2978
DDC3

site_idAC7
Number of Residues24
DetailsBINDING SITE FOR RESIDUE DUP A 952
ChainResidue
AARG386
AGLY416
ASER417
AARG420
AGLY426
AASP427
AASP429
ATYR505
APHE506
ATHR507
AGLY508
AASN513
AMG950
AMN951
AHOH2807
AHOH2812
AHOH2813
AHOH2856
AHOH2864
AHOH2947
AHOH2948
AHOH2994
PDC6
TDA5

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO A 2801
ChainResidue
ATHR348
AGLU385
AHOH2920
PDG3

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GSYrRGkatCgDVDVLIthP
ChainResidueDetails
AGLY416-PRO435

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Schiff-base intermediate with DNA => ECO:0000269|PubMed:11457865
ChainResidueDetails
ALYS312

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFP, ECO:0007744|PDB:2PFQ
ChainResidueDetails
AARG386
ASER417
AGLY426
AASN513

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:17475573, ECO:0007744|PDB:2PFO, ECO:0007744|PDB:2PFQ
ChainResidueDetails
AASP427
AASP429
AASP490

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1jms
ChainResidueDetails
AASP490

229183

PDB entries from 2024-12-18

PDB statisticsPDBj update infoContact PDBjnumon