2OGA
X-ray crystal structure of S. venezuelae DesV in complex with ketimine intermediate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000271 | biological_process | polysaccharide biosynthetic process |
A | 0008483 | molecular_function | transaminase activity |
A | 0009058 | biological_process | biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0017000 | biological_process | antibiotic biosynthetic process |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0033068 | biological_process | macrolide biosynthetic process |
B | 0000271 | biological_process | polysaccharide biosynthetic process |
B | 0008483 | molecular_function | transaminase activity |
B | 0009058 | biological_process | biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0017000 | biological_process | antibiotic biosynthetic process |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0033068 | biological_process | macrolide biosynthetic process |
C | 0000271 | biological_process | polysaccharide biosynthetic process |
C | 0008483 | molecular_function | transaminase activity |
C | 0009058 | biological_process | biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0017000 | biological_process | antibiotic biosynthetic process |
C | 0030170 | molecular_function | pyridoxal phosphate binding |
C | 0033068 | biological_process | macrolide biosynthetic process |
D | 0000271 | biological_process | polysaccharide biosynthetic process |
D | 0008483 | molecular_function | transaminase activity |
D | 0009058 | biological_process | biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0017000 | biological_process | antibiotic biosynthetic process |
D | 0030170 | molecular_function | pyridoxal phosphate binding |
D | 0033068 | biological_process | macrolide biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL A 380 |
Chain | Residue |
A | TYR39 |
A | LEU40 |
site_id | AC2 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL B 380 |
Chain | Residue |
A | HOH1181 |
B | TYR39 |
B | LEU40 |
site_id | AC3 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE CL C 380 |
Chain | Residue |
C | ARG38 |
C | TYR39 |
C | LEU40 |
site_id | AC4 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE CL D 380 |
Chain | Residue |
D | LEU40 |
D | TYR39 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA C 1025 |
Chain | Residue |
C | ASN65 |
C | HOH1042 |
D | ASN65 |
D | HOH1026 |
D | HOH1027 |
D | HOH1028 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE NA A 1022 |
Chain | Residue |
A | ASN65 |
A | HOH1040 |
A | HOH1041 |
A | HOH1043 |
B | ASN65 |
B | HOH1024 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE EDO A 1023 |
Chain | Residue |
A | TYR55 |
A | GLU57 |
A | ARG172 |
A | ARG177 |
A | HOH1124 |
D | ASP308 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO B 381 |
Chain | Residue |
B | PRO191 |
B | LYS193 |
B | ASN194 |
B | PRO355 |
B | HOH1064 |
B | HOH1065 |
B | HOH1103 |
site_id | AC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE EDO C 1026 |
Chain | Residue |
A | ARG224 |
C | HIS60 |
site_id | BC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE EDO A 1024 |
Chain | Residue |
A | PRO191 |
A | LYS193 |
A | ASN194 |
A | PRO355 |
A | HOH1068 |
A | HOH1106 |
A | HOH1287 |
site_id | BC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE EDO B 382 |
Chain | Residue |
B | ARG172 |
B | ARG177 |
B | ASP254 |
B | HOH1061 |
B | HOH1259 |
site_id | BC3 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE PGU A 1020 |
Chain | Residue |
A | SER66 |
A | GLY67 |
A | TYR93 |
A | ALA95 |
A | ASP164 |
A | ALA166 |
A | GLN167 |
A | SER188 |
A | TYR190 |
A | LYS193 |
A | TYR318 |
A | HOH1069 |
A | HOH1290 |
B | TYR221 |
B | TYR227 |
B | ASN235 |
B | ARG237 |
site_id | BC4 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE PGU B 1021 |
Chain | Residue |
A | TYR221 |
A | LYS226 |
A | TYR227 |
A | ASN235 |
A | ARG237 |
B | SER66 |
B | GLY67 |
B | TYR93 |
B | ALA95 |
B | ASP164 |
B | ALA166 |
B | GLN167 |
B | SER188 |
B | TYR190 |
B | LYS193 |
B | TYR318 |
B | HOH1066 |
B | HOH1200 |
site_id | BC5 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE PGU C 1023 |
Chain | Residue |
D | TYR227 |
D | ASN235 |
D | ARG237 |
C | SER66 |
C | GLY67 |
C | MET68 |
C | TYR93 |
C | ASP164 |
C | ALA166 |
C | GLN167 |
C | SER188 |
C | TYR190 |
C | LYS193 |
C | TYR318 |
C | HOH1060 |
C | HOH1247 |
C | HOH1248 |
D | TYR221 |
site_id | BC6 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE PGU D 1024 |
Chain | Residue |
C | TYR221 |
C | TYR227 |
C | ASN235 |
C | ARG237 |
D | SER66 |
D | GLY67 |
D | MET68 |
D | TYR93 |
D | ALA95 |
D | ASP164 |
D | ALA166 |
D | GLN167 |
D | SER188 |
D | TYR190 |
D | LYS193 |
D | TYR318 |
D | HOH1102 |
D | HOH1139 |
D | HOH1218 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 28 |
Details | BINDING: BINDING => ECO:0000269|PubMed:17456741 |
Chain | Residue | Details |
A | GLY67 | |
B | SER188 | |
B | TYR221 | |
B | TYR227 | |
B | ASN235 | |
B | TYR318 | |
C | GLY67 | |
C | GLN167 | |
C | SER188 | |
C | TYR221 | |
C | TYR227 | |
A | GLN167 | |
C | ASN235 | |
C | TYR318 | |
D | GLY67 | |
D | GLN167 | |
D | SER188 | |
D | TYR221 | |
D | TYR227 | |
D | ASN235 | |
D | TYR318 | |
A | SER188 | |
A | TYR221 | |
A | TYR227 | |
A | ASN235 | |
A | TYR318 | |
B | GLY67 | |
B | GLN167 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000305|PubMed:17456741 |
Chain | Residue | Details |
A | LYS193 | |
B | LYS193 | |
C | LYS193 | |
D | LYS193 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
D | ARG38 | |
C | ASP164 | |
C | TYR93 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
C | ARG38 | |
D | ASP164 | |
D | TYR93 |
site_id | CSA3 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
A | ASP164 | |
A | LYS193 | |
A | TYR93 |
site_id | CSA4 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
B | ASP164 | |
B | LYS193 | |
B | TYR93 |
site_id | CSA5 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
C | ASP164 | |
C | LYS193 | |
C | TYR93 |
site_id | CSA6 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
D | ASP164 | |
D | LYS193 | |
D | TYR93 |
site_id | CSA7 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
A | ASP164 | |
A | TYR93 | |
B | ARG38 |
site_id | CSA8 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ay4 |
Chain | Residue | Details |
A | ARG38 | |
B | ASP164 | |
B | TYR93 |