2JMJ
NMR solution structure of the PHD domain from the yeast YNG1 protein in complex with H3(1-9)K4me3 peptide
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ZN A 201 |
| Chain | Residue |
| A | CYS42 |
| A | CYS47 |
| A | PHE52 |
| A | CYS69 |
| A | CYS73 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ZN A 401 |
| Chain | Residue |
| A | HIS53 |
| A | CYS56 |
| A | CYS29 |
| A | CYS31 |
| A | ASN33 |
| A | TYR36 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:11742990, ECO:0000269|PubMed:11751634, ECO:0000269|PubMed:11752412, ECO:0000269|PubMed:12152067, ECO:0000269|PubMed:12353038, ECO:0000269|PubMed:12845608, ECO:0000269|PubMed:15949446, ECO:0000269|PubMed:16122352, ECO:0000269|PubMed:16168379, ECO:0000269|PubMed:16185711, ECO:0000269|PubMed:17194708 |
| Chain | Residue | Details |
| P | M3L4 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:17194708 |
| Chain | Residue | Details |
| P | LYS9 | |
| A | CYS31 | |
| A | CYS42 | |
| A | CYS47 | |
| A | HIS53 | |
| A | CYS56 | |
| A | CYS69 | |
| A | CYS73 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | SITE: Histone H3K4me3 binding => ECO:0000250|UniProtKB:Q9UK53 |
| Chain | Residue | Details |
| A | TYR28 | |
| A | MET39 | |
| A | ASP43 | |
| A | TRP51 |
