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2JB4

Isopenicillin N synthase with a 2-thiabicycloheptan-6-one product analogue

Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0009058biological_processbiosynthetic process
A0016216molecular_functionisopenicillin-N synthase activity
A0016491molecular_functionoxidoreductase activity
A0017000biological_processantibiotic biosynthetic process
A0031418molecular_functionL-ascorbic acid binding
A0042318biological_processpenicillin biosynthetic process
A0044283biological_processsmall molecule biosynthetic process
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues16
DetailsBINDING SITE FOR RESIDUE A14 A1332
ChainResidue
AARG87
AHOH2285
AHOH2349
AHOH2388
AHOH2389
AHOH2390
AHOH2391
AHOH2393
ATYR91
ASER183
AILE187
ATYR189
APHE211
AVAL272
ASER281
AFE1333

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FE A1333
ChainResidue
AHIS214
AASP216
AHIS270
AA141332
AHOH2285
AHOH2289

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A1334
ChainResidue
AARG27
ALYS80
AHOH2394

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A1335
ChainResidue
AALA204
AASP205
AGLY206
AGLU215
AALA258
AARG308
AHOH2395
AHOH2396

site_idAC5
Number of Residues11
DetailsBINDING SITE FOR RESIDUE SO4 A1336
ChainResidue
AARG53
AASP140
APHE141
AHOH2203
AHOH2397
AHOH2398
AHOH2399
AHOH2400
AHOH2401
AHOH2402
AHOH2403

Functional Information from PROSITE/UniProt
site_idPS00185
Number of Residues10
DetailsIPNS_1 Isopenicillin N synthase signature 1. KkAveSfCYL
ChainResidueDetails
ALYS97-LEU106

site_idPS00186
Number of Residues14
DetailsIPNS_2 Isopenicillin N synthase signature 2. LInCGSymAhlTnN
ChainResidueDetails
ALEU250-ASN263

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:10537113, ECO:0000269|PubMed:28703303, ECO:0000269|PubMed:9194566, ECO:0007744|PDB:1BK0, ECO:0007744|PDB:1QJE, ECO:0007744|PDB:2BJS
ChainResidueDetails
AARG87
ATYR91
ATYR189
AASP216
ASER281

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10537113, ECO:0000269|PubMed:28703303, ECO:0000269|PubMed:9194566, ECO:0007744|PDB:1QJE, ECO:0007744|PDB:2BJS
ChainResidueDetails
ASER183

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10537113, ECO:0000269|PubMed:9194566, ECO:0007744|PDB:1QJE
ChainResidueDetails
AHIS214

site_idSWS_FT_FI4
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00805, ECO:0007744|PDB:1BK0, ECO:0007744|PDB:1BLZ, ECO:0007744|PDB:1HB1, ECO:0007744|PDB:1HB2, ECO:0007744|PDB:1HB3, ECO:0007744|PDB:1HB4, ECO:0007744|PDB:1OBN, ECO:0007744|PDB:1OC1, ECO:0007744|PDB:1ODM, ECO:0007744|PDB:1ODN, ECO:0007744|PDB:1QIQ, ECO:0007744|PDB:1QJE, ECO:0007744|PDB:1QJF, ECO:0007744|PDB:1UZW, ECO:0007744|PDB:1W03, ECO:0007744|PDB:1W04, ECO:0007744|PDB:1W05, ECO:0007744|PDB:1W06, ECO:0007744|PDB:1W3V, ECO:0007744|PDB:1W3X, ECO:0007744|PDB:2BU9, ECO:0007744|PDB:2IVI, ECO:0007744|PDB:2IVJ, ECO:0007744|PDB:2JB4, ECO:0007744|PDB:2VAU, ECO:0007744|PDB:2VBB, ECO:0007744|PDB:2VBD, ECO:0007744|PDB:2VBP, ECO:0007744|PDB:2VCM, ECO:0007744|PDB:2VE1, ECO:0007744|PDB:2WO7, ECO:0007744|PDB:2Y60, ECO:0007744|PDB:2Y6F, ECO:0007744|PDB:3ZKU, ECO:0007744|PDB:3ZOI, ECO:0007744|PDB:4BB3
ChainResidueDetails
AHIS270

site_idSWS_FT_FI5
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00805
ChainResidueDetails
AARG279

site_idSWS_FT_FI6
Number of Residues1
DetailsSITE: Transition state stabilizer => ECO:0007744|PDB:1QJE
ChainResidueDetails
APHE211

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qje
ChainResidueDetails
APHE211

site_idCSA2
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qje
ChainResidueDetails
ALEU186

site_idCSA3
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qje
ChainResidueDetails
AHIS82

site_idCSA4
Number of Residues1
DetailsAnnotated By Reference To The Literature 1qje
ChainResidueDetails
AILE75

site_idMCSA1
Number of Residues4
DetailsM-CSA 145
ChainResidueDetails
APHE211polar/non-polar interaction, steric role
AHIS214metal ligand
AASP216metal ligand
AHIS270metal ligand

222926

PDB entries from 2024-07-24

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