2JAG

L1-intermediate of halorhodopsin T203V

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005216	molecular_function	monoatomic ion channel activity
A	0005886	cellular_component	plasma membrane
A	0006811	biological_process	monoatomic ion transport
A	0007602	biological_process	phototransduction
A	0009881	molecular_function	photoreceptor activity
A	0016020	cellular_component	membrane
A	0034220	biological_process	monoatomic ion transmembrane transport

Functional Information from PROSITE/UniProt

site_id	PS00327
Number of Residues	12
Details	BACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. YSVLDVfAKyVF

Chain	Residue	Details
A	TYR234-PHE245

---

site_id	PS00950
Number of Residues	13
Details	BACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYlTWaLSTPMIL

Chain	Residue	Details
A	ARG108-LEU120

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	37
Details	Topological domain: {"description":"Extracellular","evidences":[{"source":"PubMed","id":"10827943","evidenceCode":"ECO:0000269"}]}

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site_id	SWS_FT_FI2
Number of Residues	25
Details	Transmembrane: {"description":"Helical; Name=Helix A"}

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site_id	SWS_FT_FI3
Number of Residues	18
Details	Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"10827943","evidenceCode":"ECO:0000269"}]}

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Residue

Details

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site_id	SWS_FT_FI4
Number of Residues	23
Details	Transmembrane: {"description":"Helical; Name=Helix B"}

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site_id	SWS_FT_FI5
Number of Residues	21
Details	Transmembrane: {"description":"Helical; Name=Helix C"}

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site_id	SWS_FT_FI6
Number of Residues	23
Details	Transmembrane: {"description":"Helical; Name=Helix D"}

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site_id	SWS_FT_FI7
Number of Residues	22
Details	Transmembrane: {"description":"Helical; Name=Helix E"}

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site_id	SWS_FT_FI8
Number of Residues	23
Details	Transmembrane: {"description":"Helical; Name=Helix F"}

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site_id	SWS_FT_FI9
Number of Residues	28
Details	Transmembrane: {"description":"Helical; Name=Helix G"}

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site_id	SWS_FT_FI10
Number of Residues	3
Details	Binding site: {"evidences":[{"source":"PubMed","id":"10827943","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"17117890","evidenceCode":"ECO:0000269"}]}

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Details

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site_id	SWS_FT_FI11
Number of Residues	1
Details	Modified residue: {"description":"N6-(retinylidene)lysine"}

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