Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

2J0F

Structural basis for non-competitive product inhibition in human thymidine phosphorylase: implication for drug design

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0001525	biological_process	angiogenesis
A	0004645	molecular_function	1,4-alpha-oligoglucan phosphorylase activity
A	0005515	molecular_function	protein binding
A	0005829	cellular_component	cytosol
A	0006206	biological_process	pyrimidine nucleobase metabolic process
A	0006213	biological_process	pyrimidine nucleoside metabolic process
A	0006935	biological_process	chemotaxis
A	0007165	biological_process	signal transduction
A	0008083	molecular_function	growth factor activity
A	0009032	molecular_function	thymidine phosphorylase activity
A	0016154	molecular_function	pyrimidine-nucleoside phosphorylase activity
A	0016740	molecular_function	transferase activity
A	0016757	molecular_function	glycosyltransferase activity
A	0016763	molecular_function	pentosyltransferase activity
A	0030154	biological_process	cell differentiation
A	0042803	molecular_function	protein homodimerization activity
A	0046074	biological_process	dTMP catabolic process
A	0055086	biological_process	nucleobase-containing small molecule metabolic process
A	0072527	biological_process	pyrimidine-containing compound metabolic process
A	1901135	biological_process	carbohydrate derivative metabolic process
B	0001525	biological_process	angiogenesis
B	0004645	molecular_function	1,4-alpha-oligoglucan phosphorylase activity
B	0005515	molecular_function	protein binding
B	0005829	cellular_component	cytosol
B	0006206	biological_process	pyrimidine nucleobase metabolic process
B	0006213	biological_process	pyrimidine nucleoside metabolic process
B	0006935	biological_process	chemotaxis
B	0007165	biological_process	signal transduction
B	0008083	molecular_function	growth factor activity
B	0009032	molecular_function	thymidine phosphorylase activity
B	0016154	molecular_function	pyrimidine-nucleoside phosphorylase activity
B	0016740	molecular_function	transferase activity
B	0016757	molecular_function	glycosyltransferase activity
B	0016763	molecular_function	pentosyltransferase activity
B	0030154	biological_process	cell differentiation
B	0042803	molecular_function	protein homodimerization activity
B	0046074	biological_process	dTMP catabolic process
B	0055086	biological_process	nucleobase-containing small molecule metabolic process
B	0072527	biological_process	pyrimidine-containing compound metabolic process
B	1901135	biological_process	carbohydrate derivative metabolic process
C	0001525	biological_process	angiogenesis
C	0004645	molecular_function	1,4-alpha-oligoglucan phosphorylase activity
C	0005515	molecular_function	protein binding
C	0005829	cellular_component	cytosol
C	0006206	biological_process	pyrimidine nucleobase metabolic process
C	0006213	biological_process	pyrimidine nucleoside metabolic process
C	0006935	biological_process	chemotaxis
C	0007165	biological_process	signal transduction
C	0008083	molecular_function	growth factor activity
C	0009032	molecular_function	thymidine phosphorylase activity
C	0016154	molecular_function	pyrimidine-nucleoside phosphorylase activity
C	0016740	molecular_function	transferase activity
C	0016757	molecular_function	glycosyltransferase activity
C	0016763	molecular_function	pentosyltransferase activity
C	0030154	biological_process	cell differentiation
C	0042803	molecular_function	protein homodimerization activity
C	0046074	biological_process	dTMP catabolic process
C	0055086	biological_process	nucleobase-containing small molecule metabolic process
C	0072527	biological_process	pyrimidine-containing compound metabolic process
C	1901135	biological_process	carbohydrate derivative metabolic process
D	0001525	biological_process	angiogenesis
D	0004645	molecular_function	1,4-alpha-oligoglucan phosphorylase activity
D	0005515	molecular_function	protein binding
D	0005829	cellular_component	cytosol
D	0006206	biological_process	pyrimidine nucleobase metabolic process
D	0006213	biological_process	pyrimidine nucleoside metabolic process
D	0006935	biological_process	chemotaxis
D	0007165	biological_process	signal transduction
D	0008083	molecular_function	growth factor activity
D	0009032	molecular_function	thymidine phosphorylase activity
D	0016154	molecular_function	pyrimidine-nucleoside phosphorylase activity
D	0016740	molecular_function	transferase activity
D	0016757	molecular_function	glycosyltransferase activity
D	0016763	molecular_function	pentosyltransferase activity
D	0030154	biological_process	cell differentiation
D	0042803	molecular_function	protein homodimerization activity
D	0046074	biological_process	dTMP catabolic process
D	0055086	biological_process	nucleobase-containing small molecule metabolic process
D	0072527	biological_process	pyrimidine-containing compound metabolic process
D	1901135	biological_process	carbohydrate derivative metabolic process

Functional Information from PDB Data

site_id	AC1
Number of Residues	10
Details	BINDING SITE FOR RESIDUE TDR A1480

Chain	Residue
A	HIS116
A	LYS221
A	SER117
A	THR118
A	LEU148
A	TYR199
A	ARG202
A	ILE214
A	SER217
A	ILE218

site_id	AC2
Number of Residues	10
Details	BINDING SITE FOR RESIDUE TDR B1480

Chain	Residue
B	HIS116
B	SER117
B	THR118
B	LEU148
B	TYR199
B	ARG202
B	ILE214
B	SER217
B	ILE218
B	LYS221

site_id	AC3
Number of Residues	10
Details	BINDING SITE FOR RESIDUE TDR C1480

Chain	Residue
C	HIS116
C	SER117
C	THR118
C	LEU148
C	TYR199
C	ARG202
C	ILE214
C	SER217
C	LYS221
C	HOH2036

Functional Information from PROSITE/UniProt

site_id	PS00647
Number of Residues	16
Details	THYMID_PHOSPHORYLASE Thymidine and pyrimidine-nucleoside phosphorylases signature. SGRGLghTGGTlDkLE

Chain	Residue	Details
A	SER144-GLU159

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	108
Details	Repeat: {"description":"R-V-A-A-A-L-X(5,6)-L-G-R"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	64
Details	Repeat: {"description":"R-A-L-X-X-A-L-V-L"}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	16
Details	Binding site: {}

Chain

Residue

Details

Catalytic Information from CSA

site_id	CSA1
Number of Residues	3
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
A	LYS221
A	HIS116
A	ARG202

site_id	CSA2
Number of Residues	3
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
B	LYS221
B	HIS116
B	ARG202

site_id	CSA3
Number of Residues	3
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
C	LYS221
C	HIS116
C	ARG202

site_id	CSA4
Number of Residues	3
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
D	LYS221
D	HIS116
D	ARG202

site_id	CSA5
Number of Residues	4
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
A	LYS221
A	HIS116
A	SER217
A	ARG202

site_id	CSA6
Number of Residues	4
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
B	LYS221
B	HIS116
B	SER217
B	ARG202

site_id	CSA7
Number of Residues	4
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
C	LYS221
C	HIS116
C	SER217
C	ARG202

site_id	CSA8
Number of Residues	4
Details	Annotated By Reference To The Literature 1azy

Chain	Residue	Details
D	LYS221
D	HIS116
D	SER217
D	ARG202

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)