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2J08

Thermus DNA photolyase with 8-Iod-riboflavin antenna chromophore

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003677molecular_functionDNA binding
A0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006281biological_processDNA repair
A0006950biological_processresponse to stress
A0009416biological_processresponse to light stimulus
A0016829molecular_functionlyase activity
A0071949molecular_functionFAD binding
A0097159molecular_functionorganic cyclic compound binding
Functional Information from PDB Data
site_idAC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 901
ChainResidue
AHIS117
AHOH2045

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 902
ChainResidue
APRO148
AHOH2009

site_idAC3
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PO4 A1423
ChainResidue
AHOH2107
AHOH2108
AVAL135
ATYR136
ATHR137
AARG167
AASP360

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PO4 A1424
ChainResidue
ATHR42
AARG46
AGLU77
AARG336
AHIS337

site_idAC5
Number of Residues28
DetailsBINDING SITE FOR RESIDUE FAD A1421
ChainResidue
ATYR197
ASER210
AARG211
ALEU212
ASER213
APHE216
ATRP241
AGLU244
ALEU245
ATRP247
AARG248
APHE307
AASN310
AARG313
AALA317
ALEU339
AASP341
AGLY342
AASP343
AVAL346
AASN347
AGLN349
AGLY350
AHOH2089
AHOH2096
AHOH2101
AHOH2102
AHOH2103

site_idAC6
Number of Residues15
DetailsBINDING SITE FOR RESIDUE IRF A1422
ChainResidue
AARG9
AGLY10
AVAL34
ALEU35
AASP36
AASN39
ALEU40
APHE50
ASER96
AARG104
ALEU218
AGLY342
AHOH2104
AHOH2105
AHOH2106

Functional Information from PROSITE/UniProt
site_idPS00394
Number of Residues13
DetailsDNA_PHOTOLYASES_1_1 DNA photolyases class 1 signature 1. TGvPLVDAaMReL
ChainResidueDetails
ATHR290-LEU302

site_idPS00691
Number of Residues20
DetailsDNA_PHOTOLYASES_1_2 DNA photolyases class 1 signature 2. NRaRMNaAQFAvKhLllpWK
ChainResidueDetails
AASN310-LYS329

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:11707580
ChainResidueDetails
ATYR197
AGLY209
ATRP241
AARG248
AASN310
AASP341

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AARG201
AGLN373

site_idSWS_FT_FI3
Number of Residues3
DetailsSITE: Electron transfer via tryptophanyl radical => ECO:0000250
ChainResidueDetails
ATRP275
ATRP328
ATRP351

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dnp
ChainResidueDetails
ATRP328
ATRP275
ATRP351

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PDB entries from 2024-11-06

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