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2J07

Thermus DNA photolyase with 8-HDF antenna chromophore

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0003677molecular_functionDNA binding
A0003904molecular_functiondeoxyribodipyrimidine photo-lyase activity
A0006139biological_processnucleobase-containing compound metabolic process
A0006281biological_processDNA repair
A0006950biological_processresponse to stress
A0009416biological_processresponse to light stimulus
A0016829molecular_functionlyase activity
A0071949molecular_functionFAD binding
A0097159molecular_functionorganic cyclic compound binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A1423
ChainResidue
AARG46
AARG336
AHOH2312

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A1424
ChainResidue
AHIS117
AHOH2144
AHOH2147
AHOH2148

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A1425
ChainResidue
AHOH2180
APRO148
AHOH2019

site_idAC4
Number of Residues10
DetailsBINDING SITE FOR RESIDUE PO4 A1426
ChainResidue
AVAL135
ATYR136
ATHR137
AARG167
AASP360
AHOH2199
AHOH2353
AHOH2354
AHOH2355
AHOH2356

site_idAC5
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD A1421
ChainResidue
ATYR197
AGLY209
ASER210
AARG211
ALEU212
ASER213
APHE216
ATRP241
AGLU244
ALEU245
ATRP247
AARG248
APHE307
ALEU308
AASN310
AARG313
AALA317
ALEU339
AASP341
AGLY342
AASP343
AVAL346
AASN347
AGLN349
AGLY350
AHOH2316
AHOH2341
AHOH2342
AHOH2343
AHOH2344
AHOH2346

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE HDF A1422
ChainResidue
AARG9
AVAL34
ALEU35
AASP36
AASN39
ALEU40
AARG46
APHE50
ASER96
AARG104
ALEU218
AHOH2003
AHOH2347
AHOH2348
AHOH2349
AHOH2350

Functional Information from PROSITE/UniProt
site_idPS00394
Number of Residues13
DetailsDNA_PHOTOLYASES_1_1 DNA photolyases class 1 signature 1. TGvPLVDAaMReL
ChainResidueDetails
ATHR290-LEU302

site_idPS00691
Number of Residues20
DetailsDNA_PHOTOLYASES_1_2 DNA photolyases class 1 signature 2. NRaRMNaAQFAvKhLllpWK
ChainResidueDetails
AASN310-LYS329

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:11707580
ChainResidueDetails
ATYR197
AGLY209
ATRP241
AARG248
AASN310
AASP341

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AARG201
AGLN373

site_idSWS_FT_FI3
Number of Residues3
DetailsSITE: Electron transfer via tryptophanyl radical => ECO:0000250
ChainResidueDetails
ATRP275
ATRP328
ATRP351

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1dnp
ChainResidueDetails
ATRP328
ATRP275
ATRP351

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PDB entries from 2024-07-24

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