Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0003723 | molecular_function | RNA binding |
A | 0004527 | molecular_function | exonuclease activity |
A | 0004540 | molecular_function | RNA nuclease activity |
A | 0005515 | molecular_function | protein binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006401 | biological_process | RNA catabolic process |
A | 0006402 | biological_process | mRNA catabolic process |
A | 0008408 | molecular_function | 3'-5' exonuclease activity |
A | 0008859 | molecular_function | exoribonuclease II activity |
A | 0016070 | biological_process | RNA metabolic process |
A | 0016078 | biological_process | tRNA decay |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE MG A 1646 |
Chain | Residue |
A | ASP201 |
A | ASP210 |
A | HOH2055 |
A | HOH2059 |
A | HOH2060 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 1647 |
Chain | Residue |
A | HOH2020 |
A | HOH2021 |
A | PRO101 |
A | HIS103 |
A | LEU106 |
A | HOH2004 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE C5P A 1645 |
Chain | Residue |
A | PHE82 |
A | PHE86 |
A | VAL87 |
A | PRO101 |
A | ASP102 |
A | HIS103 |
A | ARG167 |
Functional Information from PROSITE/UniProt
site_id | PS01175 |
Number of Residues | 25 |
Details | RIBONUCLEASE_II Ribonuclease II family signature. HFGLglea.YAtWTSPIRKYgDminH |
Chain | Residue | Details |
A | HIS484-HIS508 | |
Functional Information from SwissProt/UniProt
Chain | Residue | Details |
A | LYS501 | |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 338 |
Chain | Residue | Details |
A | ASP201 | metal ligand |
A | ASP207 | metal ligand |
A | ASP209 | activator, electrostatic stabiliser, increase nucleophilicity |
A | ASP210 | metal ligand |
A | TYR313 | activator, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |
A | ARG500 | activator, electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor |