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2IO0

Crystal structure of human Senp2 in complex with preSUMO-2

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0008234molecular_functioncysteine-type peptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 300
ChainResidue
AHOH65
AHOH76
AHOH95
AALA392
APHE393
ALYS394
AARG396

site_idAC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 A 301
ChainResidue
AARG475
ALYS476

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 302
ChainResidue
AARG396
BASN68
BGLU69
BTHR70
BHOH306
BHOH333

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues164
DetailsRegion: {"description":"Protease","evidences":[{"source":"PubMed","id":"15296745","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PubMed","id":"15296745","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"15296745","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsPropeptide: {"featureId":"PRO_0000035950","evidences":[{"source":"PubMed","id":"15487983","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues79
DetailsDomain: {"description":"Ubiquitin-like","evidences":[{"source":"PROSITE-ProRule","id":"PRU00214","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins)"}
ChainResidueDetails

244349

PDB entries from 2025-11-05

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