2IDB
Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0005886 | cellular_component | plasma membrane |
| A | 0006744 | biological_process | ubiquinone biosynthetic process |
| A | 0008694 | molecular_function | 4-hydroxy-3-polyprenylbenzoate decarboxylase activity |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016831 | molecular_function | carboxy-lyase activity |
| A | 0030145 | molecular_function | manganese ion binding |
| A | 0034214 | biological_process | protein hexamerization |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0120233 | molecular_function | prenyl-FMNH2 binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0005886 | cellular_component | plasma membrane |
| B | 0006744 | biological_process | ubiquinone biosynthetic process |
| B | 0008694 | molecular_function | 4-hydroxy-3-polyprenylbenzoate decarboxylase activity |
| B | 0016829 | molecular_function | lyase activity |
| B | 0016831 | molecular_function | carboxy-lyase activity |
| B | 0030145 | molecular_function | manganese ion binding |
| B | 0034214 | biological_process | protein hexamerization |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0120233 | molecular_function | prenyl-FMNH2 binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0006744 | biological_process | ubiquinone biosynthetic process |
| C | 0008694 | molecular_function | 4-hydroxy-3-polyprenylbenzoate decarboxylase activity |
| C | 0016829 | molecular_function | lyase activity |
| C | 0016831 | molecular_function | carboxy-lyase activity |
| C | 0030145 | molecular_function | manganese ion binding |
| C | 0034214 | biological_process | protein hexamerization |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0120233 | molecular_function | prenyl-FMNH2 binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE 1PE A 506 |
| Chain | Residue |
| A | THR160 |
| A | TRP161 |
| A | HIS291 |
| A | THR320 |
| A | PRO329 |
| site_id | AC2 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO A 507 |
| Chain | Residue |
| A | GLY468 |
| A | HOH570 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE 1PE B 506 |
| Chain | Residue |
| B | GLY468 |
| B | TRP459 |
| B | TRP467 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE 1PE C 506 |
| Chain | Residue |
| C | TRP459 |
| C | TRP467 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | BINDING SITE FOR RESIDUE EDO C 508 |
| Chain | Residue |
| C | ASP403 |
| C | ASP404 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 3 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_01636","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"28057757","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 21 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01636","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"28057757","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"5M1D","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5M1E","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
