2IDB

Crystal Structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (UbiD) from Escherichia coli, Northeast Structural Genomics Target ER459.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0005886	cellular_component	plasma membrane
A	0006744	biological_process	ubiquinone biosynthetic process
A	0008694	molecular_function	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
A	0016831	molecular_function	carboxy-lyase activity
A	0030145	molecular_function	manganese ion binding
A	0032150	biological_process	ubiquinone biosynthetic process from chorismate
A	0034214	biological_process	protein hexamerization
A	0042802	molecular_function	identical protein binding
A	0046872	molecular_function	metal ion binding
A	0120233	molecular_function	prenyl-FMNH2 binding
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0005886	cellular_component	plasma membrane
B	0006744	biological_process	ubiquinone biosynthetic process
B	0008694	molecular_function	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
B	0016831	molecular_function	carboxy-lyase activity
B	0030145	molecular_function	manganese ion binding
B	0032150	biological_process	ubiquinone biosynthetic process from chorismate
B	0034214	biological_process	protein hexamerization
B	0042802	molecular_function	identical protein binding
B	0046872	molecular_function	metal ion binding
B	0120233	molecular_function	prenyl-FMNH2 binding
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0005886	cellular_component	plasma membrane
C	0006744	biological_process	ubiquinone biosynthetic process
C	0008694	molecular_function	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
C	0016831	molecular_function	carboxy-lyase activity
C	0030145	molecular_function	manganese ion binding
C	0032150	biological_process	ubiquinone biosynthetic process from chorismate
C	0034214	biological_process	protein hexamerization
C	0042802	molecular_function	identical protein binding
C	0046872	molecular_function	metal ion binding
C	0120233	molecular_function	prenyl-FMNH2 binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE 1PE A 506

Chain	Residue
A	THR160
A	TRP161
A	HIS291
A	THR320
A	PRO329

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site_id	AC2
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EDO A 507

Chain	Residue
A	GLY468
A	HOH570

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site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE 1PE B 506

Chain	Residue
B	GLY468
B	TRP459
B	TRP467

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site_id	AC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE 1PE C 506

Chain	Residue
C	TRP459
C	TRP467

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site_id	AC5
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EDO C 508

Chain	Residue
C	ASP403
C	ASP404

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	3
Details	ACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01636, ECO:0000305|PubMed:28057757

Chain	Residue	Details
A	ASP290
B	ASP290
C	ASP290

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site_id	SWS_FT_FI2
Number of Residues	15
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01636, ECO:0000269|PubMed:28057757, ECO:0007744|PDB:5M1D, ECO:0007744|PDB:5M1E

Chain	Residue	Details
A	ASN175
B	GLU241
C	ASN175
C	ILE178
C	ARG192
C	ARG197
C	GLU241
A	ILE178
A	ARG192
A	ARG197
A	GLU241
B	ASN175
B	ILE178
B	ARG192
B	ARG197

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