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2IA6

Bypass of Major Benzopyrene-dG Adduct by Y-Family DNA Polymerase with Unique Structural Gap

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_id1
Number of Residues
Details
ChainResidue

site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE EDO C 605
ChainResidue
CHOH441
CEDO607
CDG1805
CDA1806

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE PO4 A 1919
ChainResidue
ASER40
AGLY41
AARG331
APO41920

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 606
ChainResidue
CHOH383
CHOH384
CDG1803
CDG1804
CHOH302

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE PO4 A 1920
ChainResidue
APO41919

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO C 607
ChainResidue
CHOH441
CEDO605
CDG1804
DDC1915
DDC1916

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BAP D 2906
ChainResidue
AHOH560
CDT1812
CDA1813
DDG1906
DDA1907

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL E 601
ChainResidue
EHOH271
EHOH436
EDG1804

site_idAC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE BAP F 2906
ChainResidue
BGLU271
BTYR274
BLYS275
BHOH649
BHOH772
FHOH443
FHOH445
FDG1906

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE EDO F 602
ChainResidue
EDA1807
FHOH298
FHOH396
FDT1913
FDC1914

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE GOL F 604
ChainResidue
EHOH341
EDG1802
EDG1803
FHOH200
FDC1917
FDC1918

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CA A 403
ChainResidue
AASP7
APHE8
AASP105
AATP401
AHOH564

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA A 404
ChainResidue
AALA181
AILE186
AHOH421
AHOH548

site_idBC4
Number of Residues19
DetailsBINDING SITE FOR RESIDUE ATP A 401
ChainResidue
AASP7
APHE8
ATYR10
APHE11
ATHR45
ATYR48
AARG51
AALA57
AGLY58
AASP105
ALYS159
ACA403
AHOH406
AHOH490
AHOH563
AHOH564
CHOH448
CDA1813
DHOH442

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 502
ChainResidue
BASP7
BPHE8
BASP105
BATP501

site_idBC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 503
ChainResidue
BASP7
BGLU106
BLYS152
BATP501
BHOH756
EDA1813

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA B 504
ChainResidue
BALA181
BILE186
BHOH757
BHOH771
EHOH21
EHOH158

site_idBC8
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ATP B 501
ChainResidue
BASP105
BLYS159
BCA502
BCA503
BHOH623
BHOH756
EDA1813
FDT1905
BASP7
BPHE8
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BTYR48
BARG51

site_idBC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL B 603
ChainResidue
BGLY185
BHOH723
BHOH767

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

219140

PDB entries from 2024-05-01

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