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2HRM

Crystal structure of dUTPase complexed with substrate analogue methylene-dUTP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004170molecular_functiondUTP diphosphatase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006226biological_processdUMP biosynthetic process
A0009117biological_processnucleotide metabolic process
A0016787molecular_functionhydrolase activity
A0032991cellular_componentprotein-containing complex
A0042802molecular_functionidentical protein binding
A0046081biological_processdUTP catabolic process
A0046872molecular_functionmetal ion binding
A0070207biological_processprotein homotrimerization
Functional Information from PDB Data
site_idAC1
Number of Residues14
DetailsBINDING SITE FOR RESIDUE UC5 A 777
ChainResidue
AARG71
AMET98
AHOH778
AHOH786
AHOH814
AHOH820
ASER72
AGLY73
AASN84
AGLY87
ALEU88
AILE89
AASP90
ATYR93

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE EDO A 301
ChainResidue
AHIS76
AGLN106
AASP107

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15208312","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1dup
ChainResidueDetails
AASP90
AASP92

site_idMCSA1
Number of Residues5
DetailsM-CSA 844
ChainResidueDetails
ASER28activator
APRO70electrostatic stabiliser
ASER72electrostatic stabiliser
AGLY79modifies pKa
AILE89proton acceptor, proton donor

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PDB entries from 2025-09-24

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