Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2HHP

Structure of yeast poly(A) polymerase in a closed conformation.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003723molecular_functionRNA binding
A0005515molecular_functionprotein binding
A0005524molecular_functionATP binding
A0005634cellular_componentnucleus
A0005847cellular_componentmRNA cleavage and polyadenylation specificity factor complex
A0006397biological_processmRNA processing
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0030846biological_processtermination of RNA polymerase II transcription, poly(A)-coupled
A0031123biological_processRNA 3'-end processing
A0031124biological_processmRNA 3'-end processing
A0031126biological_processsno(s)RNA 3'-end processing
A0043631biological_processobsolete RNA polyadenylation
A0046872molecular_functionmetal ion binding
A1990817molecular_functionpoly(A) RNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FLC A 531
ChainResidue
AALA20
AASN23
ALYS24
ATHR417
AGLU418
AASP419

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE FLC A 532
ChainResidue
AVAL234
AMG533
AHOH582
AHOH670
AHOH759
AHOH761
AHOH817
AHOH833
AHOH866
ATYR224
AGLY232
AGLY233

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MG A 533
ChainResidue
AASP102
AASP154
AFLC532

Functional Information from PROSITE/UniProt
site_idPS00430
Number of Residues109
DetailsTONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mssqkvfgitgpvstvgataaenklndsliqelkkegsfeteqetanrvqvlkilqelaqrfvyevskkknmsdgmardaggkiftygsyrlgvhgpgsdi..............DTLVVVPK
ChainResidueDetails
AMET1-LYS109

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:17850751
ChainResidueDetails
ATYR87
ASER99
ALYS215
ATYR224
AGLY233

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING:
ChainResidueDetails
AASP100
AASP102
AASP154

site_idSWS_FT_FI3
Number of Residues8
DetailsSITE: Interaction with RNA
ChainResidueDetails
APHE140
ALYS145
AGLN294
AHIS314
AASN315
AARG387
ALYS392
AGLU487

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18407956
ChainResidueDetails
ASER452

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1fa0
ChainResidueDetails
ALYS215

site_idMCSA1
Number of Residues6
DetailsM-CSA 796
ChainResidueDetails
ASER89electrostatic stabiliser, polar interaction
AASP100metal ligand
AASP102metal ligand
AASP154metal ligand
ALYS215electrostatic stabiliser, polar interaction
ATYR224electrostatic stabiliser, polar interaction

223790

PDB entries from 2024-08-14

PDB statisticsPDBj update infoContact PDBjnumon