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2H99

Crystal structure of the effector binding domain of a BenM variant (R156H,T157S)

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003700molecular_functionDNA-binding transcription factor activity
A0006355biological_processregulation of DNA-templated transcription
A0019439biological_processobsolete aromatic compound catabolic process
A0032993cellular_componentprotein-DNA complex
B0003677molecular_functionDNA binding
B0003700molecular_functionDNA-binding transcription factor activity
B0006355biological_processregulation of DNA-templated transcription
B0019439biological_processobsolete aromatic compound catabolic process
B0032993cellular_componentprotein-DNA complex
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 579
ChainResidue
BLYS148
BLYS155
BHIS156
BHOH594
BHOH660
BHOH717
BHOH722
BHOH789
BHOH852

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 580
ChainResidue
ALYS90
AHIS116
APRO117
AASN118
ALEU119
ATYR281
BLYS129

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE SO4 B 581
ChainResidue
BVAL97
BGLY127
BTHR128
BARG146
BLEU147
BPRO196
BASN202
BPHE203
BHOH603
BHOH664

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 582
ChainResidue
BHIS116
BPRO117
BASN118
BLEU119

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 583
ChainResidue
ALYS148
AILE154
ALYS155
AHIS156
AHOH628

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT B 584
ChainResidue
BLEU104
BARG160
BILE269
BTYR293
BHOH637
BHOH691

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE ACT A 585
ChainResidue
ALEU104
AARG160
AILE269
ATYR293
AHOH629
AHOH639

site_idAC8
Number of Residues3
DetailsBINDING SITE FOR RESIDUE ACT B 586
ChainResidue
BHIS206
BASN209
BHOH678

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACT A 587
ChainResidue
ASER157
ALEU159
ATYR286
AARG290
APRO301
APRO302
AASN303

site_idBC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE ACT A 588
ChainResidue
AGLY127
ATHR128
AARG146
AASN202
APHE203
AHOH650
AHOH748

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL B 589
ChainResidue
BSER99
BARG146
BVAL227

site_idBC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL B 590
ChainResidue
BPHE102
BGLY103
BLEU104
BSER246
BSER249
BGLU296
BHOH765
BHOH781
BHOH872

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues38
DetailsDNA_BIND: H-T-H motif => ECO:0000255|PROSITE-ProRule:PRU00253
ChainResidueDetails
APHE18-GLN37
BPHE18-GLN37

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0007744|PDB:2F7A
ChainResidueDetails
ASER99
ATHR128
BSER99
BTHR128
BASN202
BPHE203
AASN202
APHE203

site_idSWS_FT_FI3
Number of Residues6
DetailsBINDING: BINDING => ECO:0007744|PDB:2F78, ECO:0007744|PDB:2F7A
ChainResidueDetails
ALEU104
ATYR293
BLEU104
BARG160
BTYR293
AARG160

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0007744|PDB:2F78
ChainResidueDetails
APHE144
BPHE144

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PDB entries from 2024-06-12

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